View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20937_low_6 (Length: 278)
Name: NF20937_low_6
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20937_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 42836477 - 42836230
Alignment:
| Q |
14 |
catcatctaagaaacgttaaaactaataatttttt-gaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaaca |
112 |
Q |
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| T |
42836477 |
catcatctaagaaacgttaaaactaataatttttttgaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaaca |
42836378 |
T |
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| Q |
113 |
catgtcgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42836377 |
catgtcgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataa |
42836278 |
T |
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| Q |
213 |
taattgtagagatcgtgcactgccatcaaacttagcgtcctcccattt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42836277 |
taattgtagagatcgtgcactgccatcaaacttagcgtcctcccattt |
42836230 |
T |
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