View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_high_18 (Length: 249)
Name: NF20938_high_18
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 28612893 - 28612676
Alignment:
| Q |
18 |
acaagtaacattgtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaagaaatgtcaa |
117 |
Q |
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| T |
28612893 |
acaagtaacattgtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaagaaatgtcaa |
28612794 |
T |
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| Q |
118 |
cactatcaatgtttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattttcctgctcccataacctttgtac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612793 |
cactatcaatgtttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattttcctgctcccataacctttgtac |
28612694 |
T |
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| Q |
218 |
catgtctttggttccttc |
235 |
Q |
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|||||||||||||||||| |
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| T |
28612693 |
catgtctttggttccttc |
28612676 |
T |
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