View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20938_high_3 (Length: 491)
Name: NF20938_high_3
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 143 - 473
Target Start/End: Complemental strand, 11832245 - 11831914
Alignment:
| Q |
143 |
gatcattattattgtcggtattagttacgcttcgacaaatagaaaatttaacaagctccgagtattctgctgcatgaaaggtttcaaactgaattcatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11832245 |
gatcattattattgtcggtattagttacgcttcgacaaatagaaaatttaacaagctccgagtattctgctgcatgaaaggtttcaaactaaattcatga |
11832146 |
T |
|
| Q |
243 |
aagtaaaatcctctcaaatagaattatttgatactcatttaatgcactgtatggcaaatacttggaccgtcttcaatcttcttatctaaagagtatagta |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11832145 |
aagtaaaatcctctcaaatagaattatttgatactcatttaatgcactgtatggcaaatacttggaccgtcttcaatcttctaacctaaagagtatagta |
11832046 |
T |
|
| Q |
343 |
aagaaaaataagacttga-tagtgaagaggacaacacaggagaggatctagatgcaaatatatgtagtatgcatgcgtgataggtggggtcgtggagttt |
441 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11832045 |
aagaaaaataagacttgattagtgaagaggactacacaggagaggatccagatgcaaatatatgtagtatgcatgcgtgataggtggggtcgtggagttt |
11831946 |
T |
|
| Q |
442 |
gtgtgtcttcaccaaatcttgtggctattttt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11831945 |
gtgtgtcttcaccaaatcttgtggctattttt |
11831914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11832386 - 11832340
Alignment:
| Q |
1 |
agagagcaacacaagagaagaggaataataattgatttttagtgaac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11832386 |
agagagcaacacaagagaagaggaataataagtgatttttagtgaac |
11832340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University