View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_1 (Length: 694)
Name: NF20938_low_1
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 29014324 - 29014035
Alignment:
| Q |
11 |
catcatcatcaggaacaactcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgcacagctggtgctgttatgtttggt |
110 |
Q |
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| T |
29014324 |
catcatcatcaggaacagctcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgtgcagctggtgctgttatgtttggt |
29014225 |
T |
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| Q |
111 |
gataacttcatgtcaggattttatgtgccttcaggttttggaaatccttctcttaccattggaactgatcctcttttctaaaaaatcaattaagcaatat |
210 |
Q |
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| T |
29014224 |
a-----ttcatatcaggattttatgtgccttcaggttttggaaatccttctcttaccattggaactgatcctcttttctaaaaaatcaattaagcaatat |
29014130 |
T |
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| Q |
211 |
taccattgcttctgcacaccgcctagataattaccagtaaaccagatatgatcggacaaagggtaccctctaatttgttcatttccactaaaaaataagt |
310 |
Q |
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| T |
29014129 |
taccattgcttctgcacactgcctagataattac-----------gtatgatcggac----ggtaccctctaatttgttcttttccactaaaaaataagt |
29014045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 362 - 527
Target Start/End: Complemental strand, 29014037 - 29013872
Alignment:
| Q |
362 |
cacagtaatataaaagatggattatgcatgttaagagactccttgcagatttctgcttggctgtggacccacacttagacaaagggtaccctctaaatgt |
461 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29014037 |
cacaataatataaaagatggattatgcatgttaagagactccttgcagatttctgcttggctgtggacccacacttagacaaagggtaccctctaaatgt |
29013938 |
T |
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| Q |
462 |
tgacaaaagtcaaaaggtaccccaccccactcctcatggagaatctattttctcactgcaaaacca |
527 |
Q |
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| T |
29013937 |
tgacaaaagtcaaaaggtaccccaccccactcctcatggagaatctattttctcactgcaaaacca |
29013872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 29011002 - 29010740
Alignment:
| Q |
11 |
catcatcatcaggaacaactcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgcacagctggtgctgttatgtttggt |
110 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| ||| ||||||||||||||||||||| |
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| T |
29011002 |
catcatcatcaggaacagctcctaggcagaggggacctccaggatttgcaatgggagccggtgctggagcattagca--gctggtgctgttatgtttggt |
29010905 |
T |
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| Q |
111 |
gataacttcatgtcaggattttatgtgccttcaggt---------tttggaaatccttctcttaccattggaactgatcctcttttctaaaaaatcaatt |
201 |
Q |
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| T |
29010904 |
gataacttcatgtcaggatttgatgtgccttcaggtgctggagcattagcagctggtgctgttacctttgcaactgatcctcttttctaaacaatcaatt |
29010805 |
T |
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| Q |
202 |
aagcaatattaccattgcttctgcacaccgcctagataattaccagtaaaccagatatgatcgga |
266 |
Q |
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| T |
29010804 |
aagaaatcttaccattgttgttgcacactgcctagctagttaccagtaaaccaaatatgatcgga |
29010740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 29013879 - 29013763
Alignment:
| Q |
556 |
caaaaccattacactttatcactttttgcatcaacacaaacacaacataacctctttacctttaaacattctatcaaaaccattgttctctgtattctct |
655 |
Q |
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| T |
29013879 |
caaaaccattacactttatcactttttgcatcaacacaa------cataacctctttacctttaaacattctatcaaaaccattgttctctgtattctct |
29013786 |
T |
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| Q |
656 |
atggtgaaaatctgggttgaaat |
678 |
Q |
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| T |
29013785 |
atggtgaaaatctgggttgaaat |
29013763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 531 - 678
Target Start/End: Complemental strand, 29366591 - 29366451
Alignment:
| Q |
531 |
gtgtaaagtagtcattgaaataccacaaaaccattacactttatcactttttgcatcaacacaaacacaacataacctctttacctttaaacattctatc |
630 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
29366591 |
gtgtaaagtggtcattgaaatactgcaaaaccattacactttatcactttttgcattaacacaaacacaaca-------tttacctttaaacattctatc |
29366499 |
T |
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| Q |
631 |
aaaaccattgttctctgtattctctatggtgaaaatctgggttgaaat |
678 |
Q |
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|||||||||||| ||| || |||||||||||||||| ||||||||||| |
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| T |
29366498 |
aaaaccattgttttctatactctctatggtgaaaatatgggttgaaat |
29366451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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