View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_11 (Length: 337)
Name: NF20938_low_11
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 33966496 - 33966802
Alignment:
| Q |
13 |
aatatgtcttccatcgaagcttatctactactcaagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattcc |
112 |
Q |
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| T |
33966496 |
aatatgtcttccatccaagcttatctactactcgagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattcc |
33966595 |
T |
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| Q |
113 |
gacgtgaccgcaaattaaaaactttggacacaatcacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaac |
212 |
Q |
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| T |
33966596 |
gacgtgaccgcaaattaaaaactttggacacaatgacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaac |
33966695 |
T |
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| Q |
213 |
cttgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaa |
312 |
Q |
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| T |
33966696 |
cttgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaa |
33966795 |
T |
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| Q |
313 |
gtataag |
319 |
Q |
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| T |
33966796 |
gtataag |
33966802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 43076909 - 43076824
Alignment:
| Q |
186 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattg |
271 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| ||||||||| |
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| T |
43076909 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg |
43076824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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