View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_12 (Length: 317)
Name: NF20938_low_12
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 39053999 - 39053716
Alignment:
| Q |
19 |
acaacttaatcactcgcttaaataattaatatttcaaaatagtctctaaaatttaaaatctttgatcatctccttttgcataactcgatttaatttaatc |
118 |
Q |
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| T |
39053999 |
acaacttaatcactcgcttaaataattaatatttcaaaatagtctctaaaatttaaaatctttgatcatttccttttgcataactcgatttaatttaatc |
39053900 |
T |
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| Q |
119 |
cttgaaattttctaactgagaattttaagattgagtgatattttttaattctgttagttttagaaaagnnnnnnncaaacnnnnnnnngttacaagagga |
218 |
Q |
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| T |
39053899 |
cttgaaattttctaactgagaattttcagattgagtgatattttttaattctgttagttttagaaaag-aaaaaacaaac--ttttttgttacaaga-ga |
39053804 |
T |
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| Q |
219 |
aaaaagaacaatttgagattaaattgataattcagtaaaaaagcaaacaatgatggcgaacatgaatgaaatggaatataccgttctt |
306 |
Q |
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| T |
39053803 |
aaaaagaacaatttgagattaaattgatgattcagtaaaaaagcaaacaatgatggcgaacatgaaagaaatggaatataccgttctt |
39053716 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 5170228 - 5170184
Alignment:
| Q |
43 |
attaatatttcaaaatagtctctaaaatttaaaatctttgatcat |
87 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
5170228 |
attattatttcaaaatagtttacaaaatttaaaatctttgatcat |
5170184 |
T |
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