View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20938_low_13 (Length: 300)

Name: NF20938_low_13
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20938_low_13
NF20938_low_13
[»] chr6 (13 HSPs)
chr6 (84-289)||(5376890-5377095)
chr6 (84-289)||(5378745-5378950)
chr6 (84-280)||(1088676-1088871)
chr6 (84-289)||(19645314-19645518)
chr6 (84-194)||(15868405-15868514)
chr6 (84-225)||(15149116-15149263)
chr6 (98-259)||(9415095-9415255)
chr6 (84-194)||(15866593-15866702)
chr6 (84-194)||(33866112-33866221)
chr6 (174-285)||(8915570-8915681)
chr6 (84-194)||(33869259-33869368)
chr6 (188-281)||(20985830-20985923)
chr6 (210-271)||(24544757-24544818)
[»] chr3 (4 HSPs)
chr3 (84-289)||(17402796-17403001)
chr3 (115-289)||(1140045-1140218)
chr3 (84-289)||(6789633-6789837)
chr3 (185-244)||(9032763-9032822)
[»] chr7 (10 HSPs)
chr7 (84-289)||(20046509-20046715)
chr7 (84-289)||(44963176-44963380)
chr7 (84-289)||(4895597-4895801)
chr7 (84-289)||(28124601-28124806)
chr7 (84-289)||(28126428-28126633)
chr7 (170-289)||(28014287-28014406)
chr7 (84-194)||(37405559-37405668)
chr7 (170-290)||(25471784-25471904)
chr7 (193-286)||(8405628-8405721)
chr7 (157-211)||(4880288-4880343)
[»] chr8 (14 HSPs)
chr8 (84-289)||(30224243-30224447)
chr8 (90-289)||(25249025-25249223)
chr8 (84-289)||(5567439-5567643)
chr8 (84-290)||(6428753-6428959)
chr8 (84-269)||(3379149-3379332)
chr8 (84-289)||(3375448-3375641)
chr8 (84-269)||(31032038-31032217)
chr8 (99-211)||(36535924-36536035)
chr8 (182-269)||(14939625-14939711)
chr8 (189-269)||(19473649-19473728)
chr8 (189-269)||(19544574-19544653)
chr8 (189-269)||(19588043-19588122)
chr8 (232-289)||(36535865-36535922)
chr8 (84-140)||(14935590-14935646)
[»] chr4 (13 HSPs)
chr4 (84-289)||(7040374-7040578)
chr4 (84-289)||(23564689-23564893)
chr4 (84-289)||(18656121-18656325)
chr4 (84-289)||(52520614-52520819)
chr4 (84-289)||(52518772-52518977)
chr4 (97-261)||(54296454-54296617)
chr4 (84-203)||(23566449-23566567)
chr4 (84-244)||(23985787-23985946)
chr4 (84-199)||(3529251-3529365)
chr4 (84-269)||(52545137-52545319)
chr4 (183-269)||(56074680-56074766)
chr4 (228-293)||(23566379-23566444)
chr4 (170-255)||(18395691-18395776)
[»] chr2 (5 HSPs)
chr2 (84-289)||(29758133-29758337)
chr2 (160-248)||(8759119-8759207)
chr2 (170-269)||(18612074-18612174)
chr2 (143-186)||(20516061-20516103)
chr2 (221-261)||(17148670-17148710)
[»] chr1 (15 HSPs)
chr1 (84-289)||(17449324-17449527)
chr1 (84-289)||(16808592-16808797)
chr1 (84-194)||(9312042-9312151)
chr1 (84-194)||(3282814-3282923)
chr1 (84-194)||(3284515-3284624)
chr1 (84-194)||(9310425-9310534)
chr1 (117-278)||(48941646-48941810)
chr1 (156-261)||(5924828-5924932)
chr1 (84-153)||(37664704-37664773)
chr1 (84-153)||(37674426-37674495)
chr1 (84-153)||(37702199-37702268)
chr1 (84-141)||(902090-902147)
chr1 (84-130)||(5924946-5924992)
chr1 (189-269)||(9487458-9487535)
chr1 (84-121)||(48940689-48940726)
[»] scaffold0057 (1 HSPs)
scaffold0057 (94-269)||(58809-58982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (84-269)||(39158-39341)
[»] scaffold0251 (1 HSPs)
scaffold0251 (87-194)||(6242-6348)
[»] chr5 (4 HSPs)
chr5 (84-185)||(39787177-39787277)
chr5 (122-245)||(25076173-25076296)
chr5 (122-245)||(25134142-25134265)
chr5 (195-267)||(20012959-20013030)
[»] scaffold0189 (1 HSPs)
scaffold0189 (189-289)||(19063-19162)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 5376890 - 5377095
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5376890 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcatt 5376989  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||    
T  5376990 caatatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgactt 5377089  T
Q  284 ttctcc 289  Q
    ||||||    
T  5377090 ttctcc 5377095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 5378745 - 5378950
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5378745 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcatt 5378844  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||    
T  5378845 caatatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgactt 5378944  T
Q  284 ttctcc 289  Q
    ||||||    
T  5378945 ttctcc 5378950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 280
Target Start/End: Complemental strand, 1088871 - 1088676
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||| ||||| || ||| || ||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  1088871 tagttgataagtaaattagagttagtagctttgttagaagttagttagagttagttagtcaaactaatctct-atatataggaacactattgtactcatt 1088773  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttc-taagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatga 280  Q
    |||||||||||||||||||||||| ||||| |||||||||| |  |||||||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  1088772 catcatcttttatcaatctattca-ttctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttgcttacatctatga 1088676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 19645518 - 19645314
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||||||||||||||||| || || ||| |||||||||| ||||| |||  ||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  19645518 tagttgataagtaaactaaagttagtagcttggttagaaattagtcagaggtagttactcaaactaatctct-atatataagaacactattgtactcatt 19645420  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| |||||||||||||||||| ||||||||||||| |||||  ||||||||||| ||||||||| |||||  ||||||||||| ||||| |||||| ||    
T  19645419 cattatcttttatcaatctatttatttctacaatgaatttctttgagtatctccctcatgagtactcttatacttgctatcttggttacatctatgactt 19645320  T
Q  284 ttctcc 289  Q
    ||||||    
T  19645319 ttctcc 19645314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 15868405 - 15868514
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  15868405 tagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 15868503  T
Q  184 catcatctttt 194  Q
    ||| |||||||    
T  15868504 cattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 15149263 - 15149116
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaac--actattgtact-- 179  Q
    ||||||||||||||||||| |  | ||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||  ||| |||||||      
T  15149263 tagttgataagtaaactagggtcagtagcttggttagaagttagttagagttagttactcaaattaat-ttctatatataggaacgtactgttgtactgt 15149165  T
Q  180 ---cattcatcatcttttatcaatctattcatttctacaatgagtttct 225  Q
       ||||||| ||||||||||||||||||||||||||||||||||||||    
T  15149164 actcattcattatcttttatcaatctattcatttctacaatgagtttct 15149116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 259
Target Start/End: Original strand, 9415095 - 9415255
Alignment:
Q  98 actagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatctttt-at 196  Q
    ||||||| || ||| |||||||||||||||||||| ||||||| | ||||||||| | |||||||| ||||||||||||||||  |  ||||||||| ||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatc-tctatatataagaacactattgtactctctagtcatcttttaat 9415193  T
Q  197 c-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttg 259  Q
    | |||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  9415194 caaatcta-tca-ttctacaatgagtttctatgagtatctcccacatgagtactcttatgtttg 9415255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 15866593 - 15866702
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||| ||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  15866593 tagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatc-tctatatttaggaacactattgtactcatt 15866691  T
Q  184 catcatctttt 194  Q
    ||| |||||||    
T  15866692 cattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 33866112 - 33866221
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  33866112 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatc-tctatatataggaacactattgtactcatt 33866210  T
Q  184 catcatctttt 194  Q
    ||  |||||||    
T  33866211 cactatctttt 33866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 8915570 - 8915681
Alignment:
Q  174 tgtactcattcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttaca 273  Q
    |||||||||| | |||||||||| |||||||||||||||| ||| |||||||| |||||||| ||||| |||||| |||||| ||||| |||||||||||    
T  8915570 tgtactcatttagcatcttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttaca 8915669  T
Q  274 gctatgattttt 285  Q
     |||||||||||    
T  8915670 tctatgattttt 8915681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 33869259 - 33869368
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||| ||||    
T  33869259 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatc-tctatatataggaacactattgtacgcatt 33869357  T
Q  184 catcatctttt 194  Q
    ||  |||||||    
T  33869358 cactatctttt 33869368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 20985923 - 20985830
Alignment:
Q  188 atcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    |||||||||||||||||||||||||| ||||| ||| ||  ||||||| |||||||||||| |||||| |||| | |||| ||||| |||||||    
T  20985923 atcttttatcaatctattcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgcaaacttgattacatctatgat 20985830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  210 tctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgctta 271  Q
    ||||| ||||||||||| ||||||||||| ||||||||| |||||| ||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 17403001 - 17402796
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17403001 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcatt 17402902  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||    
T  17402901 caatatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgactt 17402802  T
Q  284 ttctcc 289  Q
    ||||||    
T  17402801 ttctcc 17402796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 115 - 289
Target Start/End: Original strand, 1140045 - 1140218
Alignment:
Q  115 ggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctac 214  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1140045 ggttagaagttagttagagttagttactcaaactaatctct-atatataggaacactattgtactcattcatcatcttttatcaatctattcatttctac 1140143  T
Q  215 aatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttctcc 289  Q
    |||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||||||||    
T  1140144 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctcc 1140218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 6789633 - 6789837
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||| ||||||| |||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  6789633 tagtggataagtgaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaatactattgtactcatt 6789731  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatc-ttgcttacagctatgatt 282  Q
    ||  ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||| |||||| |    
T  6789732 cactatcttttttcaatctattca-ttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctttgcttacatctatgact 6789830  T
Q  283 tttctcc 289  Q
    | |||||    
T  6789831 tctctcc 6789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 9032822 - 9032763
Alignment:
Q  185 atcatcttttatc-aatctattcatttctacaatgagtttctaagagtatctcccacatga 244  Q
    ||||||||||||| ||||||||| || |||| ||||||||||| | |||||||||||||||    
T  9032822 atcatcttttatccaatctattcctt-ctactatgagtttctatgggtatctcccacatga 9032763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 20046715 - 20046509
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20046715 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcatt 20046616  T
Q  184 catcatc-ttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatt 282  Q
    ||  ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||| |||||| |    
T  20046615 caatatctttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctcgcttacatctatgact 20046516  T
Q  283 tttctcc 289  Q
    |||||||    
T  20046515 tttctcc 20046509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 44963176 - 44963380
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  44963176 tagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaattaatctct-atatataggaacactattgtactcatt 44963274  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||| ||| |||||| |||||||||| |||||| |||||| ||    
T  44963275 catcatcttttatcaatctattcatttctacaatgaatttctttgagtatctccctcatgaatactcttatgcttgctatcttacttacatctatgactt 44963374  T
Q  284 ttctcc 289  Q
    ||||||    
T  44963375 ttctcc 44963380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 4895597 - 4895801
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  4895597 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttatttactcaaactaatc-tctatatataggaacactattgtactcatt 4895695  T
Q  184 catcatctttt-atcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatt 282  Q
    ||||||||||| |||||| |||||| ||| |  |||  | |||| |||||||||||| |||||||| |||||||||||| ||||||||||| |||||||     
T  4895696 catcatcttttaatcaatatattca-ttccaatatggatctctatgagtatctcccagatgagtactcttatgtttgctctcttgcttacatctatgatc 4895794  T
Q  283 tttctcc 289  Q
    |||||||    
T  4895795 tttctcc 4895801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 28124806 - 28124601
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  28124806 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 28124708  T
Q  184 catcatctttt-atc-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    ||||||||||| ||| ||| | |||| ||| |  |||  | |||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||    
T  28124707 catcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgat 28124609  T
Q  282 ttttctcc 289  Q
     |||||||    
T  28124608 ctttctcc 28124601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 28126633 - 28126428
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  28126633 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 28126535  T
Q  184 catcatctttt-atc-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    ||||||||||| ||| ||| | |||| ||| |  |||  | |||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||    
T  28126534 catcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgat 28126436  T
Q  282 ttttctcc 289  Q
     |||||||    
T  28126435 ctttctcc 28126428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 28014406 - 28014287
Alignment:
Q  170 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||||||    
T  28014406 ctattgtactcattattcatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgct 28014307  T
Q  270 tacagctatgatttttctcc 289  Q
    |||| ||||||| |||||||    
T  28014306 tacatctatgatctttctcc 28014287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 37405668 - 37405559
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||||||||  |||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  37405668 tagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 37405570  T
Q  184 catcatctttt 194  Q
    ||  |||||||    
T  37405569 cactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 25471904 - 25471784
Alignment:
Q  170 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    ||||||||||||||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| ||| ||  |||||| |||||||||| ||    
T  25471904 ctattgtactcattattcatcttttatcaatctattcatttatataatgagtttctattagtatctcccacgtgaataatcttatgcttgctatctttct 25471805  T
Q  270 tacagctatgatttttctcct 290  Q
    |||| ||||||| ||||||||    
T  25471804 tacatctatgatctttctcct 25471784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 8405628 - 8405721
Alignment:
Q  193 ttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttc 286  Q
    ||||||||||| |||||||||||||||||||||| || |||||||| ||||| ||| |||||| ||||||| |||||||||  |||||| ||||    
T  8405628 ttatcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatgatctttc 8405721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 4880288 - 4880343
Alignment:
Q  157 atatataggaacactattgtactcattcatcatcttttatcaatct-attcatttc 211  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||    
T  4880288 atatatatgaacaccattatactcattcatcatcttttatcaatctaattcatttc 4880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 30224243 - 30224447
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  30224243 tagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctct-atatataggaacactattgtactcatt 30224341  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||    
T  30224342 cattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgactt 30224441  T
Q  284 ttctcc 289  Q
    ||||||    
T  30224442 ttctcc 30224447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 25249025 - 25249223
Alignment:
Q  90 ataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcat 189  Q
    ||||||||||||||| || ||| |||||||||||||||||| |  ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||    
T  25249025 ataagtaaactagagttagtagcttggttagaagttagttaaaggtagttactcaaactaatctct-atatataggaacactattgtactcattcatgat 25249123  T
Q  190 cttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttctcc 289  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||| |||||||||||||||||  ||||| ||||||||    
T  25249124 cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgcttacatatatgacttttctcc 25249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 5567439 - 5567643
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||||||||  |||||||||| || ||| || |||||||||||||| || |||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  5567439 tagttgatagctaaactagagttagtagcttagttagaagttagttggagttagttactcaaactaatctct-atatataggaaaactattgtactcatt 5567537  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||    
T  5567538 catcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgactt 5567637  T
Q  284 ttctcc 289  Q
    ||||||    
T  5567638 ttctcc 5567643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 6428753 - 6428959
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||  || |||| ||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  6428753 tagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaatctct-atatataggaacactattgtaatcatt 6428851  T
Q  184 catcatctttta-tcaa-tctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    |||||||||||| |||| |||||||| | |||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||     
T  6428852 catcatcttttaatcaaatctattcact-ctacaatgagtttctttgagtatctctcacatgagtactcttatgtttgctatcttacttacatctatgac 6428950  T
Q  282 ttttctcct 290  Q
    || ||||||    
T  6428951 ttctctcct 6428959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 269
Target Start/End: Complemental strand, 3379332 - 3379149
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||||||||  |||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||| | |||||  ||||| |||||||||||||||    
T  3379332 tagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaactaatc-tctatattaaggaaaactattgtactcatt 3379234  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||  ||||  ||||| |||||||    
T  3379233 catcattttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgct 3379149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 3375641 - 3375448
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||| ||||    
T  3375641 tagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaactctattgtacccatt 3375543  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||| ||||||||||||||||||||||          ||||||||||||||||||||| ||| || |||||||||| |||||| ||||||  |    
T  3375542 cattatctttt-tcaatctattcatttctacaat----------gagtatctcccacatgagtactcttttgcttgctatcttacttacatctatgacct 3375454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 84 - 269
Target Start/End: Complemental strand, 31032217 - 31032038
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||| | || ||| |||||||||||||||    | |||||||||||||||||||| | ||||||||||||| || |  |||||||    
T  31032217 tagttgataagtaaactagggttagtagcttggttagaagttag----agttagttactcaaactaatctct-atatataggaacattactacactcatt 31032123  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  31032122 catgatcttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 36536035 - 36535924
Alignment:
Q  99 ctagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatcttttatca 198  Q
    |||||| || ||| |||||||||||||||||||| |||||||||||||||||||| | |||||||| || ||| ||||||||||||||||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct-atatatagcaatactgttgtactcattcatcatcttttatca 36535937  T
Q  199 atctattcatttc 211  Q
    |||||||||||||    
T  36535936 atctattcatttc 36535924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 14939625 - 14939711
Alignment:
Q  182 ttcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| |||||||| | |||||||||| | |||| ||||| |||||||    
T  14939625 ttcatcatcttttatcaatctattcatt-ctataatgagtttctacgagtatcttctacatgagtactcatatgcttgctttcttgct 14939711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 19473649 - 19473728
Alignment:
Q  189 tcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||  ||||| |||||||    
T  19473649 tcttctatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 19544574 - 19544653
Alignment:
Q  189 tcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||  ||||| |||||||    
T  19544574 tcttctatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 19588122 - 19588043
Alignment:
Q  189 tcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||  ||||| |||||||    
T  19588122 tcttctatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 36535922 - 36535865
Alignment:
Q  232 atctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttctcc 289  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||  |||||||    
T  36535922 atctcccacatgagtactcttatgcttgctatcttgcttacatctatgacctttctcc 36535865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 14935590 - 14935646
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagtta 140  Q
    ||||||||| ||||||||||| || ||  ||||||||||||||||||||||||||||    
T  14935590 tagttgataggtaaactagagttagtaacttggttagaagttagttagaattagtta 14935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 7040374 - 7040578
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  7040374 tagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctct-atatataggaacactattgtactcatt 7040472  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||    
T  7040473 cattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgactt 7040572  T
Q  284 ttctcc 289  Q
    ||||||    
T  7040573 ttctcc 7040578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 23564893 - 23564689
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  23564893 tagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctct-atatataggaacactattgtactcatt 23564795  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||| ||||||||| |||||| ||    
T  23564794 cattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctattttgcttacatctatgactt 23564695  T
Q  284 ttctcc 289  Q
    ||||||    
T  23564694 ttctcc 23564689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 18656121 - 18656325
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    |||||||||  |||||||||| || ||| || ||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  18656121 tagttgatagctaaactagagttagtagcttagttagaagttagttagagttagttactcaaactaatctct-atatataggaaaactattgtactcatt 18656219  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||    
T  18656220 catcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgactt 18656319  T
Q  284 ttctcc 289  Q
    ||||||    
T  18656320 ttctcc 18656325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 52520614 - 52520819
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  52520614 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 52520712  T
Q  184 catcatctttt-atc-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    ||||||||||| ||| ||| | |||||||| |  |||  | |||| ||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||    
T  52520713 catcatcttttaatcaaatattttcatttc-aatatggatctctatgagtatctcccacatgagtactcttatgcttgctctctttcttacatctatgat 52520811  T
Q  282 ttttctcc 289  Q
     |||||||    
T  52520812 ctttctcc 52520819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 52518772 - 52518977
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||| |    
T  52518772 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactgttgtactcaat 52518870  T
Q  184 catcatctttt-atc-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    ||||||||||| ||| ||| | |||| ||| |  |||  | |||| ||||||||||||||||||| | |||||| ||||| ||||||||||| |||||||    
T  52518871 catcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctcccacatgagttctcttatgcttgctctcttgcttacatctatgat 52518969  T
Q  282 ttttctcc 289  Q
     |||||||    
T  52518970 ctttctcc 52518977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 54296454 - 54296617
Alignment:
Q  97 aactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatctttt-a 195  Q
    |||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcattcatgatcttttaa 54296552  T
Q  196 tcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgct 261  Q
    |||||| |||||||| || |||||||||||| ||||||||||| ||| ||||| |||||| |||||    
T  54296553 tcaatcaattcattt-tataatgagtttctatgagtatctccctcatcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 23566567 - 23566449
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||  || ||| ||||||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  23566567 tagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaatc-tctatatataggaacactattgtactcatt 23566469  T
Q  184 catcatcttttatcaatcta 203  Q
    ||| ||||||||||||||||    
T  23566468 cattatcttttatcaatcta 23566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 23985787 - 23985946
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  23985787 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatc-tctatatataggaacactattgtactcatt 23985885  T
Q  184 catcatcttttatc-aatctattcatttctacaatgagtttctaagagtatctcccacatga 244  Q
    || ||||||||||| |||||||| | |||| | |||||| |||| |  ||||||||||||||    
T  23985886 caccatcttttatcaaatctattga-ttctcctatgagtctctatggttatctcccacatga 23985946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 3529365 - 3529251
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| |||||||| || || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3529365 tagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 3529267  T
Q  184 catcatcttttatcaa 199  Q
    ||| ||||||||||||    
T  3529266 cattatcttttatcaa 3529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 269
Target Start/End: Complemental strand, 52545319 - 52545137
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| ||||||||||||| |||||| |||||||| ||| |||| || | |||||||||||||||  |||| |||||    
T  52545319 tagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacacaa-ctaaactct-atatataggaacactcatgta-tcatt 52545223  T
Q  184 c-atcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
      || |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||| | ||| |||||||    
T  52545222 ttattatcttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 56074766 - 56074680
Alignment:
Q  183 tcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  56074766 tcatcatcttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 23566444 - 23566379
Alignment:
Q  228 gagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttctcctatg 293  Q
    ||||||||||| |||| |||| |||||| ||||||||||||||||| |||||| ||||||||||||    
T  23566444 gagtatctccctcatgggtactcttatgcttgctatcttgcttacatctatgacttttctcctatg 23566379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 18395776 - 18395691
Alignment:
Q  170 ctattgtactcattcatcatcttttatca-atctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatg 255  Q
    ||||||||||||||||  ||||||||||| |||||||||  | ||| |||||| | || ||||||||||||||||| ||| ||||||    
T  18395776 ctattgtactcattcactatcttttatcatatctattca-ctatactatgagtctatatgagtatctcccacatgaatactcttatg 18395691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 29758133 - 29758337
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  29758133 tagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctct-atatataggaacactattgtactcatt 29758231  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| ||    
T  29758232 cattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgactt 29758331  T
Q  284 ttctcc 289  Q
    ||||||    
T  29758332 ttctcc 29758337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 8759207 - 8759119
Alignment:
Q  160 tataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtac 248  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  8759207 tataggaacactattgtactcattcatcatcttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagtac 8759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 18612174 - 18612074
Alignment:
Q  170 ctattgtactcattcatcat-cttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgc 268  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||| |   | |||||||||||||||||| |||||| ||||| ||||||    
T  18612174 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgc 18612075  T
Q  269 t 269  Q
    |    
T  18612074 t 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 20516103 - 20516061
Alignment:
Q  143 caaactaatcttttatatataggaacactattgtactcattcat 186  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||    
T  20516103 caaactaat-ttttatatataagaacactattgtactcattcat 20516061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 17148710 - 17148670
Alignment:
Q  221 tttctaagagtatctcccacatgagtacccttatgtttgct 261  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  17148710 tttctatgagtatctcccacatgagtactgttatgtttgct 17148670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 17449324 - 17449527
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||| | || ||| || ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17449324 tagttgataagtaaactagggttagtagcttcgttagaagttagttagagttagttactcaaactaatctct-atatataggaacactattgtactcatt 17449422  T
Q  184 catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgattt 283  Q
    ||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| || ||||||||||||||||| ||||||  |    
T  17449423 cattatctttt-tcaatctattcatgtctacaatgagattctatgagtatctcccacatgagtactcttttgcttgctatcttgcttacatctatgacct 17449521  T
Q  284 ttctcc 289  Q
    ||||||    
T  17449522 ttctcc 17449527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 16808797 - 16808592
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  16808797 tagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatc-tctatatatatgaacactattgtactcatt 16808699  T
Q  184 catcatctttt-atc-aatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgat 281  Q
    ||||||||||| ||| ||| | |||| ||| |  |||  | |||| |||||||||| |||||||||| |||||| ||||| ||||||||||| |||||||    
T  16808698 catcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctccgacatgagtactcttatgcttgctctcttgcttacatctatgat 16808600  T
Q  282 ttttctcc 289  Q
     |||||||    
T  16808599 ctttctcc 16808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 9312042 - 9312151
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  9312042 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 9312140  T
Q  184 catcatctttt 194  Q
    ||| |||||||    
T  9312141 cattatctttt 9312151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 3282814 - 3282923
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3282814 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 3282912  T
Q  184 catcatctttt 194  Q
    ||  |||||||    
T  3282913 cactatctttt 3282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 3284515 - 3284624
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3284515 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcatt 3284613  T
Q  184 catcatctttt 194  Q
    ||  |||||||    
T  3284614 cactatctttt 3284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 9310425 - 9310534
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| ||||  | ||||||||||||||||||||||||||||    
T  9310425 tagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaat-atctatatataggaacactattgtactcatt 9310523  T
Q  184 catcatctttt 194  Q
    ||| |||||||    
T  9310524 cattatctttt 9310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 278
Target Start/End: Original strand, 48941646 - 48941810
Alignment:
Q  117 ttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatctttt-atc-aatctattcatttc--t 212  Q
    |||||||||||||||| || |||||||||||||||| | |||| |||  ||||||||||||||||||||  ||||||| ||| ||||||||||||||  |    
T  48941646 ttagaagttagttagagttggttactcaaactaatc-tctatacatataaacactattgtactcattcagtatcttttaatcaaatctattcatttctat 48941744  T
Q  213 acaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctat 278  Q
    | ||||||||| || ||||||||| ||||||| ||| |||||  ||||| ||||||||||| ||||    
T  48941745 ataatgagtttatatgagtatctctcacatgaatactcttatacttgctctcttgcttacatctat 48941810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 5924932 - 5924828
Alignment:
Q  156 tatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatg 255  Q
    |||||||| |||||||  |||| |  |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| | |||| ||| ||||||    
T  5924932 tatatataagaacactcgtgtattatttcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcctatatgaatactcttatg 5924834  T
Q  256 tttgct 261  Q
     |||||    
T  5924833 cttgct 5924828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 37664773 - 37664704
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatct 153  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||||||||    
T  37664773 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatct 37664704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 37674495 - 37674426
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatct 153  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||||||||    
T  37674495 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatct 37674426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 37702199 - 37702268
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatct 153  Q
    ||||||||| ||||||||||| || ||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  37702199 tagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatct 37702268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 902090 - 902147
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttac 141  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||    
T  902090 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 902147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 5924992 - 5924946
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagtta 130  Q
    ||||||||| ||||| ||||| || ||||||||||||||||||||||    
T  5924992 tagttgataggtaaattagagttagtagtttggttagaagttagtta 5924946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 9487458 - 9487535
Alignment:
Q  189 tcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    ||||||||||||||||||| ||||||||||| | |||  ||||||||| ||||||| ||  |||||| ||||| |||||||    
T  9487458 tcttttatcaatctattca-ttctacaatgaatctct--gagtatctctcacatgaataatcttatgcttgctttcttgct 9487535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 48940689 - 48940726
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttaga 121  Q
    ||||||||||||||||||||| || |||||||||||||    
T  48940689 tagttgataagtaaactagagttagtagtttggttaga 48940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 58809 - 58982
Alignment:
Q  94 gtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcatcatcttt 193  Q
    ||||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  58809 gtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct-atatataggaacactattgtactcattcatcatcttt 58907  T
Q  194 tatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  58908 tatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 58982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 269
Target Start/End: Original strand, 39158 - 39341
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||| | |||||||| ||| |||| || | |||||||||||||||  |||| |||||    
T  39158 tagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacacaa-ctaaactct-atatataggaacactcatgta-tcatt 39254  T
Q  184 -catcatcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgct 269  Q
     |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||  |||||| |||||||    
T  39255 tcatcatcttttatcaatctattcatttctataatgagtttttatgagtatctcccacatgagtactcttaattttgctttcttgct 39341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 6242 - 6348
Alignment:
Q  87 ttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcattcat 186  Q
    |||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||     
T  6242 ttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattgtactcattcac 6340  T
Q  187 catctttt 194  Q
     |||||||    
T  6341 tatctttt 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 39787277 - 39787177
Alignment:
Q  84 tagttgataagtaaactagagctactagtttggttagaagttagttagaattagttactcaaactaatcttttatatataggaacactattgtactcatt 183  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  39787277 tagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatc-tctatatataggaacactattttactcatt 39787179  T
Q  184 ca 185  Q
    ||    
T  39787178 ca 39787177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 25076296 - 25076173
Alignment:
Q  122 agttagttagaattagttactcaaactaatcttttatatataggaaca-ctattgtactcattcatcatcttttatcaatctattcatttctacaatgag 220  Q
    ||||||||||| | ||| | || ||||||||| | | ||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  25076296 agttagttagagtaagtcattccaactaatctct-agatataggaacaacaattgtactctttcatcatcttttatcaatatattcatttctataatgag 25076198  T
Q  221 tttctaagagtatctcccacatgag 245  Q
    |||||| || |||||| | ||||||    
T  25076197 tttctatgaatatctctctcatgag 25076173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 25134265 - 25134142
Alignment:
Q  122 agttagttagaattagttactcaaactaatcttttatatataggaaca-ctattgtactcattcatcatcttttatcaatctattcatttctacaatgag 220  Q
    ||||||||||| | ||| | || ||||||||| | | ||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  25134265 agttagttagagtaagtcattccaactaatctct-agatataggaacaacaattgtactctttcatcatcttttatcaatatattcatttctataatgag 25134167  T
Q  221 tttctaagagtatctcccacatgag 245  Q
    |||||| || |||||| | ||||||    
T  25134166 tttctatgaatatctctctcatgag 25134142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 20013030 - 20012959
Alignment:
Q  195 atcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttg 267  Q
    ||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  20013030 atcaatcaattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttg 20012959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 19063 - 19162
Alignment:
Q  189 tcttttatcaatctattcatttctacaatgagtttctaagagtatctcccacatgagtacccttatgtttgctatcttgcttacagctatgatttttctc 288  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||| | |||| || |||||||||||||| ||||||||||||||    
T  19063 tcttttatcaatctattcatt-ctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttacatctatgatttttctc 19161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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