View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_20 (Length: 241)
Name: NF20938_low_20
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43602705 - 43602928
Alignment:
| Q |
1 |
ttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctgattttgagtccctacaaacaacttaccactgtgcctcttctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602705 |
ttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctgattttgagtccctacaaacaacttaccactgtgcctcttctgt |
43602804 |
T |
|
| Q |
101 |
cctaagaaacgacggacaaatcacgtctatagcattgtcatcaagtggtttactttacacaggctctgattccaatgttgtaaggtgttggaaactgcct |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602805 |
cctaagaaacgacggacaaatcacgtccatagcattgtcatcaagtggtttactttacacaggctctgattccaatgttgtaaggtgttggaaactgcct |
43602904 |
T |
|
| Q |
201 |
gagttcactgaatgtggacagttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
43602905 |
gagttcactgaatgtggacagttg |
43602928 |
T |
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