View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_21 (Length: 236)
Name: NF20938_low_21
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 43382155 - 43381954
Alignment:
| Q |
17 |
aatatcaatattactggtagcatttttacaatctcaatgcagataaaactacatataattcatataacatcaaacactttaatcaagtttttaatatata |
116 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||| || | ||||||||||||| ||||||||||| | |
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| T |
43382155 |
aatatcaatattactgcttgcatttttacaatctcaatgcagataaaactacttaaaattcatataatataagacactttaatcaaatttttaatataga |
43382056 |
T |
|
| Q |
117 |
caactctaaaaatataaagcttgattaaaatatacaactcaatgtnnnnnnnnnttacaacttttattagttttgtaaaatattcaactttacaaatcct |
216 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
43382055 |
caactctaaaaatataaagattgattaaaatatacaactcaatgtaaattttttttacaacttttattagttttgtaaaatattgaactctacaaatcct |
43381956 |
T |
|
| Q |
217 |
tt |
218 |
Q |
| |
|
|| |
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|
| T |
43381955 |
tt |
43381954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 16286174 - 16286371
Alignment:
| Q |
21 |
tcaatattactggtagcatttttacaatctcaatgcagataaaactacatataattcatataacatcaaacactttaatcaagtttttaatatatacaac |
120 |
Q |
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|||||||||||| ||||||||| | ||||||||||| | ||||||||||||||| || ||||||| | ||||||||||||| |||||||| |||||||| |
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| T |
16286174 |
tcaatattactgctagcattttaaaaatctcaatgcgaacaaaactacatataatccacataacattagacactttaatcaaatttttaatttatacaac |
16286273 |
T |
|
| Q |
121 |
tctaaaaatataaagcttgattaaaatatacaactcaatgtnnnnnnnnnttacaacttttattagttttgtaaaatattcaactttacaaatccttt |
218 |
Q |
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|||| |||| |||| ||||||||||||||||||| | ||| |||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
16286274 |
tctacaaatgtaaaacttgattaaaatatacaacactgtgtaaaaaaaaattacaactttaattagttttgtaaaatatacaactctacaaatccttt |
16286371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 17472786 - 17472657
Alignment:
| Q |
17 |
aatatcaatattactggtagcatttttacaatctcaatgcagataaaactacatataattcatataacatcaaacactttaatcaagtttttaatatata |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| | ||||||||| ||||||||||||| ||||||||||| | |
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| T |
17472786 |
aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca |
17472687 |
T |
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| Q |
117 |
caactctaaaaatataaagcttgattaaaa |
146 |
Q |
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||||||||||||||||||| |||||||||| |
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|
| T |
17472686 |
caactctaaaaatataaagtttgattaaaa |
17472657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 17580428 - 17580557
Alignment:
| Q |
17 |
aatatcaatattactggtagcatttttacaatctcaatgcagataaaactacatataattcatataacatcaaacactttaatcaagtttttaatatata |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| | ||||||||| ||||||||||||| ||||||||||| | |
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|
| T |
17580428 |
aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca |
17580527 |
T |
|
| Q |
117 |
caactctaaaaatataaagcttgattaaaa |
146 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
17580528 |
caactctaaaaatataaagtttgattaaaa |
17580557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 50167027 - 50167162
Alignment:
| Q |
21 |
tcaatattactgg-tagcatttttacaatctcaatgcagataaaactacatataattcatataacatcaaacactttaatcaagtttttaatatatacaa |
119 |
Q |
| |
|
||||||||||| | ||||||||||| ||||| || || | |||||||| |||||| || ||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
50167027 |
tcaatattacttgctagcatttttaaaatctaaacgcgaacaaaactacttataatccacataacattggacactttaatcaaatttttaatatatacaa |
50167126 |
T |
|
| Q |
120 |
ctctaaaaatataaagcttgattaaaatatacaact |
155 |
Q |
| |
|
|| || |||| |||| |||||||||||||||||||| |
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|
| T |
50167127 |
ctttacaaatgtaaaacttgattaaaatatacaact |
50167162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 50167179 - 50167224
Alignment:
| Q |
173 |
acaacttttattagttttgtaaaatattcaactttacaaatccttt |
218 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||||| |
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|
| T |
50167179 |
acaactttaattagttttgtaaaatatacaactctacaaatccttt |
50167224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 18428951 - 18428802
Alignment:
| Q |
76 |
tcatataacatcaaacactttaatcaagtttttaatatatacaactctaaaaatataaagcttgattaaaatatacaactcaatgt-----nnnnnnnnn |
170 |
Q |
| |
|
|||| |||||| | |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
18428951 |
tcatgtaacattagacacttcaatcaaatttttaatatatacaactcaaaaaatataaagcttgattaaaatatacaattatatgtaaaaaaaaaaaaaa |
18428852 |
T |
|
| Q |
171 |
ttacaacttttattagttttgtaaaatattcaactttacaaatcctttct |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
18428851 |
ttacaacttttattagtcatgtaaaatattcaactctacaaatcctttct |
18428802 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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