View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_22 (Length: 236)
Name: NF20938_low_22
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 30169797 - 30169578
Alignment:
| Q |
1 |
tgagtcagcggtgaaaatgtttgtagggttaatgtctcagaatgtgaatgacattgagtttccaacactgcaacaacaacaacttcaaccacnnnnnnnn |
100 |
Q |
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| T |
30169797 |
tgagtcagcggtgaaaatgtttgaagggttaatgtctcagaaggtgaatgacattgagtttccaacactgcaacaacaacaacttcaaccac----aaaa |
30169702 |
T |
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| Q |
101 |
nnnncaaagaggc------gatcttcaaattcaacgtaatgtcatggaaactccacctgcacaggatgaagcatcttcatcaaattcatcaagtgttgct |
194 |
Q |
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| T |
30169701 |
aaaacaaaggggccgttatgatcttcaaattcaacctgatgtcagggaaattccacctgcacaggatgaggcatcttcgtcaatttcatcaagtgttgct |
30169602 |
T |
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| Q |
195 |
aatgttgatgatccaaccccagaa |
218 |
Q |
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| T |
30169601 |
aatgttgatgatccaaccccagaa |
30169578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 30166545 - 30166445
Alignment:
| Q |
114 |
gatcttcaaattcaacgtaatgtcatggaaactccacctgcacaggatgaagcatcttcatcaaattcatcaagtgttgctaatgttgatgatccaaccc |
213 |
Q |
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| T |
30166545 |
gatcttcaaaagcaacctattgtctcggaaactccaactgcacagaaagaggcatcttcatcaaattcatcaagtgttgctaatgctgataatacaaccc |
30166446 |
T |
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| Q |
214 |
c |
214 |
Q |
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| T |
30166445 |
c |
30166445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 30144474 - 30144383
Alignment:
| Q |
114 |
gatcttcaaattcaacgtaatgtcatggaaactccacctgcacaggatgaagcatcttcatcaaattcatcaagtgttgctaatgttgatga |
205 |
Q |
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| T |
30144474 |
gatcttcaaaatcaacctattgtctcggaacctccaactgcacaggaaaaggcatcttcatcaaattcatcaggtgttgctaatgctgatga |
30144383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 30187863 - 30187772
Alignment:
| Q |
114 |
gatcttcaaattcaacgtaatgtcatggaaactccacctgcacaggatgaagcatcttcatcaaattcatcaagtgttgctaatgttgatga |
205 |
Q |
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| T |
30187863 |
gatcttcaaaatcaacctattgtctcggaaactccaacttcacaggaagaggcatcttcatcaaattcatcaggtgttactaatgctgatga |
30187772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 30172296 - 30172233
Alignment:
| Q |
142 |
aaactccacctgcacaggatgaagcatcttcatcaaattcatcaagtgttgctaatgttgatga |
205 |
Q |
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| T |
30172296 |
aaactccaactgcacaggaagaggcatcttcctcaaattcatcaggtgttgctaatgctgatga |
30172233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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