View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_4 (Length: 422)
Name: NF20938_low_4
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 46920723 - 46920413
Alignment:
| Q |
19 |
ctctaagcatatgattcaagtgttcttgggttgaaaagcaccattaattctattatctttttaaccaaattaattctattaaatctataaatatttgcta |
118 |
Q |
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| T |
46920723 |
ctctaaacatatgattcaagtgttcttgggttgaaaagcaccattaattctattatctttttaaccaaattaattctattaaatctataaatatttgcta |
46920624 |
T |
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| Q |
119 |
tgaataaaatgggtttaaattgttgaggaaaatattattaattgtttgacctatatgtcacttcacatagtattttagcttcaata-nnnnnnncctaga |
217 |
Q |
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| T |
46920623 |
tgaataaaatgggtttaaattgttgaggaaaat---attaattgtttgacctatatgtcacttcacatagtattttagcttcaatattttttttcctaga |
46920527 |
T |
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| Q |
218 |
aaaacacagaagttatatattctggtctttataattatttttacttttgatacatgtagtatcaaaattgttggtttcagtatgggtgattataatagga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46920526 |
aaaacacagaagttatatattctggtctttataattatttttacttttgatacatgtagtatcaaaattgttggtttcagtttgggtgattataatagga |
46920427 |
T |
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| Q |
318 |
catccttttccttc |
331 |
Q |
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|||||||||||||| |
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| T |
46920426 |
catccttttccttc |
46920413 |
T |
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