View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20938_low_8 (Length: 369)
Name: NF20938_low_8
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_8 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 971461 - 971790
Alignment:
| Q |
16 |
attgaacttgcaattgacaaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactc |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971461 |
attgaacttgcaattcacaaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactc |
971560 |
T |
|
| Q |
116 |
aacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagcttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971561 |
aacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagcttt |
971660 |
T |
|
| Q |
216 |
gtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggttt |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
971661 |
gtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggttt |
971760 |
T |
|
| Q |
316 |
gcaacaatatgttatagcaaaaggagtgaa |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
971761 |
gcaacaatatgttatagcaaaaggagtgaa |
971790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 942191 - 942523
Alignment:
| Q |
16 |
attgaacttgcaattgacaaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactc |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942191 |
attgaacttgcaattcacaaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactc |
942290 |
T |
|
| Q |
116 |
aacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagcttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942291 |
aacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagcttt |
942390 |
T |
|
| Q |
216 |
gtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggttt |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
942391 |
gtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggttt |
942490 |
T |
|
| Q |
316 |
gcaacaatatgttatagcaaaaggagtgaagaa |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
942491 |
gcaacaatatgtaatagcaaaaggagtgaagaa |
942523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 949197 - 949509
Alignment:
| Q |
33 |
caaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaa |
132 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
949197 |
caaataataatggaacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaattggaaaacatactcaacaagttttccatcaa |
949296 |
T |
|
| Q |
133 |
ggaaggatcaaaggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
949297 |
ggaaggatcaaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaa |
949396 |
T |
|
| Q |
233 |
tctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatag |
332 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
949397 |
tctatggttgatttcactatttcaaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatag |
949496 |
T |
|
| Q |
333 |
caaaaggagtgaa |
345 |
Q |
| |
|
||||||||||||| |
|
|
| T |
949497 |
caaaaggagtgaa |
949509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 348
Target Start/End: Original strand, 960169 - 960484
Alignment:
| Q |
33 |
caaataatagtggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaa |
132 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960169 |
caaataataatggaacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaa |
960268 |
T |
|
| Q |
133 |
ggaaggatcaaaggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960269 |
ggaaggatcaaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaa |
960368 |
T |
|
| Q |
233 |
tctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatag |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
960369 |
tctatggttgatttcactatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgtaatag |
960468 |
T |
|
| Q |
333 |
caaaaggagtgaagaa |
348 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
960469 |
caaaaggagtgaagaa |
960484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 47 - 348
Target Start/End: Original strand, 936302 - 936603
Alignment:
| Q |
47 |
gcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaagg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| | |||||||| || ||| ||| ||||||||||||||| || | | |
|
|
| T |
936302 |
gcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaag |
936401 |
T |
|
| Q |
147 |
aagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgattt |
246 |
Q |
| |
|
|| ||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
936402 |
aatctgaaattgtgaagaacacaataagtgagtgtgaagaaaatggcatcaaaggagaggaaaagctttgtgtaacatcattggaatctatggttgattt |
936501 |
T |
|
| Q |
247 |
cactatttcgaaactcggaaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaag |
346 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||| |||| ||||||||| | ||| | || | || |||||| ||||||| || |||||||| |||||| |
|
|
| T |
936502 |
cactacttcgaaacttggaaacaatgtcgaagctgtttcaacagaagtgaaaaaagaaagcagtgacttgcaagaatatgtaatggcaaaaggtgtgaag |
936601 |
T |
|
| Q |
347 |
aa |
348 |
Q |
| |
|
|| |
|
|
| T |
936602 |
aa |
936603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 68 - 348
Target Start/End: Original strand, 909573 - 909850
Alignment:
| Q |
68 |
gttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaagaa |
167 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||| || ||| | || ||||||||| ||||||| | |||| ||||||||||||| | | |
|
|
| T |
909573 |
gttgcgaattccattcccttttcatcaaacaaattggaaaacatccttaactacttctccatcaagcaaggatcgacggaatctgaaattgtgaagaaca |
909672 |
T |
|
| Q |
168 |
caataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaa |
267 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| || ||| || ||||| |
|
|
| T |
909673 |
caataagtgaatgtgaagcatatggtatcaaaggagaggaaaagctttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaaa |
909772 |
T |
|
| Q |
268 |
caatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaa |
348 |
Q |
| |
|
||||||||| || |||| |||||||| || | | || |||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
909773 |
caatgttgacactgtttcaacagaagtaaatggagaaag---tggtttacaacaatatgtaatagcaaacggagtgaagaa |
909850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 295
Target Start/End: Original strand, 975127 - 975356
Alignment:
| Q |
66 |
aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaag |
165 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||| ||||||| |||| ||||||| | | | |||||||| | |
|
|
| T |
975127 |
aagttgctaattcaatacccttttcatcaaacaagatggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaa |
975226 |
T |
|
| Q |
166 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgga |
265 |
Q |
| |
|
|| || ||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| | ||| ||||| || |
|
|
| T |
975227 |
caccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcacgacttctaaacttggt |
975326 |
T |
|
| Q |
266 |
aacaatgttgaagctatttccacagaagtg |
295 |
Q |
| |
|
|| |||||||| ||| |||| ||||||||| |
|
|
| T |
975327 |
aaaaatgttgaggctgtttcaacagaagtg |
975356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 295
Target Start/End: Complemental strand, 420034 - 419805
Alignment:
| Q |
66 |
aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaag |
165 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| | | | |||||||| | |
|
|
| T |
420034 |
aagttgctaattcaatacctttttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaa |
419935 |
T |
|
| Q |
166 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgga |
265 |
Q |
| |
|
|| || ||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || |
|
|
| T |
419934 |
caccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggt |
419835 |
T |
|
| Q |
266 |
aacaatgttgaagctatttccacagaagtg |
295 |
Q |
| |
|
|| |||||||| ||| |||| ||||||||| |
|
|
| T |
419834 |
aaaaatgttgaggctgtttcaacagaagtg |
419805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 43 - 295
Target Start/End: Original strand, 924081 - 924333
Alignment:
| Q |
43 |
tggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatca |
142 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| || ||| | || ||||||||| ||||||| |
|
|
| T |
924081 |
tggagcaacattcttgcctcgtgaagttgctaattccataccattttcatcaaacaaagtggaaaacatccttaactacttctccatcaagcaaggatcg |
924180 |
T |
|
| Q |
143 |
aaggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttg |
242 |
Q |
| |
|
|||| |||||||||||||| || || || |||||| || ||| |||| ||||||||| ||||||||| ||||| || || ||||||| |
|
|
| T |
924181 |
gcggaatatgaaattgtgaaaaacaccattggtagttgtgaaatgcctgctatcgaaggagaggaaaagagttgtgtaacatcattagagtcaatggttg |
924280 |
T |
|
| Q |
243 |
atttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtg |
295 |
Q |
| |
|
||||||||| ||| || || |||||||||||||||||| |||| ||||||||| |
|
|
| T |
924281 |
atttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtg |
924333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 293
Target Start/End: Original strand, 916031 - 916280
Alignment:
| Q |
44 |
ggagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaa |
143 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||| || || | || ||||||||| |||||||| |
|
|
| T |
916031 |
ggagcaacattcttgcctcgtgaagtcgctaattccataccattttcatcaaacaaagtggaaaacatccttaattacttctccatcaagcaaggatcag |
916130 |
T |
|
| Q |
144 |
aggaagctgaaattgtgaaaagaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttga |
243 |
Q |
| |
|
|||| |||||| | ||||| | | || || | |||||| | | ||| |||| ||||||||| ||||||||| ||||| ||||| |||||||| |
|
|
| T |
916131 |
cggaatctgaaaatttgaaacaagccattggttattgtgaaacgcctactatcgaaggagaggaaaagagttgtgtaacatcattagaatcaatggttga |
916230 |
T |
|
| Q |
244 |
tttcactatttcgaaactcggaaacaatgttgaagctatttccacagaag |
293 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||| |||| ||||||| |
|
|
| T |
916231 |
tttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaag |
916280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 901854 - 902002
Alignment:
| Q |
65 |
gaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaa-a |
163 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| || || ||| | |||||||||||| |||||||||| || || |||||||||| | |
|
|
| T |
901854 |
gaagttgctaattccattcccttttcatcaaacaaagtggaaaaaatccttaaccacttttccatcaagcaaggatcaaaagagtctaaaattgtgaaga |
901953 |
T |
|
| Q |
164 |
agaacaata-agtgagtgtgaagcaaatggcatcaaaggtgaggaaaag |
211 |
Q |
| |
|
| | || || ||||||||||||| ||||| ||||||||| ||| ||||| |
|
|
| T |
901954 |
ataccattatagtgagtgtgaagaaaatgacatcaaaggagagcaaaag |
902002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 295
Target Start/End: Original strand, 10537 - 10766
Alignment:
| Q |
66 |
aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaaaag |
165 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| | | | |||||||| | |
|
|
| T |
10537 |
aagttgctaattcaatacctttttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaa |
10636 |
T |
|
| Q |
166 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgga |
265 |
Q |
| |
|
|| || ||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || |
|
|
| T |
10637 |
caccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggt |
10736 |
T |
|
| Q |
266 |
aacaatgttgaagctatttccacagaagtg |
295 |
Q |
| |
|
|| |||||||| ||| |||| ||||||||| |
|
|
| T |
10737 |
aaaaatgttgaggctgtttcaacagaagtg |
10766 |
T |
|
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