View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20938_low_9 (Length: 366)
Name: NF20938_low_9
Description: NF20938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20938_low_9 |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: scaffold0242 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 6216 - 6502
Alignment:
| Q |
24 |
aaacataggtccaacaaatcaaccatcaaatcaatcttgtaccataatacgtttttgcattcctaaccatgatttatcagtccattcagagactaaataa |
123 |
Q |
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| T |
6216 |
aaacataggtccaccaaatcaaccatcaaagcaatcttgtaccataatacgtttt-gcattcctaaccatgatttatcagtccattcagagactaaataa |
6314 |
T |
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| Q |
124 |
aatgtattgagaagagaacacaacaaagaaagnnnnnnngaagttcttgcagaagagtaatgttacatggacagtcttaacacaatcttcatagaaagca |
223 |
Q |
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| T |
6315 |
aatgtattgagaagagaacacaacaaagaaagaaaaa---aagttcttgcagaagagtaatgttacatggacagtcttaacacaatcttcatagaaacca |
6411 |
T |
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| Q |
224 |
aatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcccttttgttttctctcattcatgattcatcataacttgta |
314 |
Q |
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| T |
6412 |
aatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcccttttgttttctcccattcatgattcatcataacttgta |
6502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 6536 - 6576
Alignment:
| Q |
309 |
cttgtatcatcctgcatatagccacacttctatattataat |
349 |
Q |
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| T |
6536 |
cttgtatcatcctgcatatagccacacttctatattataat |
6576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 29474759 - 29475030
Alignment:
| Q |
24 |
aaacataggtccaacaaatcaaccatcaaatcaatcttgtaccataa--tacgtttttgcattcctaaccatgatttatcagtccattcagagactaaat |
121 |
Q |
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||||| ||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29474759 |
aaacacaggtccaccaaatcaaccattaaagcaatcttgtaccataaaataagtttttgcattcctaaccatgatttatcagtccattcagagacaaaat |
29474858 |
T |
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| Q |
122 |
aaaatgtattgagaagagaacacaacaaagaaagnnnnnnngaagttcttgcagaagagtaatgttacatggacagtcttaacacaatcttcatagaaag |
221 |
Q |
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| T |
29474859 |
aaaatgtattgagaccaca----aacaaagaaag-aaaaaagaagttcttgcagaagagtaatgttaaatagata-------------ctttatagaaac |
29474940 |
T |
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| Q |
222 |
caaatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcccttttgttttctctcattcatgattcatcataacttgta |
314 |
Q |
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| T |
29474941 |
caaatgctcactgttgatttttctttctttttcctaaacatgaaaaggttct-ccttttg--ttcttccattcatgattcatcataacttgta |
29475030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 29444702 - 29444825
Alignment:
| Q |
74 |
gtttttgcattcctaaccatgatttatcagtccattcagagactaaataaaatgtattgagaagagaacacaacaaagaaagnnnnnnngaagttcttgc |
173 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| | || |||||||| ||||| | | ||||| |
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| T |
29444702 |
gtttttgcattcctaatcatgatttatcagtcaatt--gagactaaataaaatgtatt-----gcgaccacaacaatgaaagaaaaaagaagatacttgc |
29444794 |
T |
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| Q |
174 |
agaagagtaatgttacatggacagtcttaac |
204 |
Q |
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| T |
29444795 |
agaagagtaatgttacatggacagtcttaac |
29444825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 29458099 - 29458152
Alignment:
| Q |
173 |
cagaagagtaatgttacatggacagtcttaacacaatcttcatagaaagcaaat |
226 |
Q |
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| T |
29458099 |
cagaagagtaatgttacttggactgtcttaacacaaccttcatagaaaccaaat |
29458152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 27980178 - 27980267
Alignment:
| Q |
188 |
acatggacagtcttaacacaatcttcatagaaagcaaatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcccttt |
279 |
Q |
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|||||||||||||||||||| |||| || || |||||| | ||||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27980178 |
acatggacagtcttaacacagacttcctaaaagccaaatgctcactattaatttttct--ctttttcctaaagatcaaaaggttctcccttt |
27980267 |
T |
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