View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_high_17 (Length: 212)
Name: NF20939_high_17
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 54638849 - 54638655
Alignment:
| Q |
1 |
cagatattaacaactagattatgtaaatatccaaaaacattccctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttagg |
100 |
Q |
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| T |
54638849 |
cagatattaacaactagattatgtaaatatccaaaaacattccctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttagg |
54638750 |
T |
|
| Q |
101 |
cttcactgagctttggacatttgacttcttggcagggcctgaactaggggctgctgccgagaagagactctcgagctccgacatatcaatctctg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54638749 |
cttcactgagctttggacatttgacttcttggcagggcctgaactaggggctgctgccgagaagagactctcgagctctgacatatcaatctctg |
54638655 |
T |
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