View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_high_18 (Length: 209)
Name: NF20939_high_18
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 13627323 - 13627148
Alignment:
| Q |
16 |
aagaatatgcagaagtggagaaactagcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaatagggtccgtgacttctttataca |
115 |
Q |
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| T |
13627323 |
aagaatatgcagaagtggagaaactagcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaataggatccgtgacttctttataca |
13627224 |
T |
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| Q |
116 |
taacaccaacaacataagactcaaccattatccaccttggccctacactcatctggctcttggtcttggacatcac |
191 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13627223 |
taacaccagcaacataagactcaaccattatccaccttgtccctacactcatctggctcttggtcttggacatcac |
13627148 |
T |
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Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 39312720 - 39312869
Alignment:
| Q |
42 |
gcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaatagggtccgtgacttctttatacataacaccaacaacataagactcaacc |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39312720 |
gcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaatagggtctatgacttctttatacataacaccagcaacataagactcaacc |
39312819 |
T |
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| Q |
142 |
attatccaccttggccctacactcatctggctcttggtcttggacatcac |
191 |
Q |
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| T |
39312820 |
attatccaccttgtccctacactcatctggctcttggtcttggacatcac |
39312869 |
T |
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Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 34120161 - 34119996
Alignment:
| Q |
26 |
agaagtggagaaactagcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaatagggtccgtgacttctttatacataacaccaac |
125 |
Q |
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|||||| || ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
34120161 |
agaagtagaaaaactagcatataaattgatggaacttattgcaatgagtttgggtttagtaccaaataggttccgtgacttctttatacataacaccagc |
34120062 |
T |
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| Q |
126 |
aacataagactcaaccattatccaccttggccctacactcatctggctcttggtcttggacatcac |
191 |
Q |
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|| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||| |
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| T |
34120061 |
aatataagactcaaccattatccaccttgtccctaccctcatctggctcttggtctcggacgtcac |
34119996 |
T |
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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 47508377 - 47508548
Alignment:
| Q |
16 |
aagaatatgcagaagtggagaaactagcatataaatt---tatggaacttattgcagtgagtttaggtttagtaccaaatagggtccgtgacttctttat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| || |||| | | | | |||| ||||||| ||||||||||||||||||||||||| |
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| T |
47508377 |
aagaatatgcagaagtggagaaactagcatataaattgcatata-aatttatggaactta--ttag-tttagtatcaaatagggtccgtgacttctttat |
47508472 |
T |
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| Q |
113 |
acataacaccaacaacataagactcaaccattatccaccttggccctacactcatctggctcttggtcttggacat |
188 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47508473 |
acataacaccagcaacataagactcaaccattatccaccttgtccctacactcatctggctcttggtcttggacat |
47508548 |
T |
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