View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_low_1 (Length: 452)
Name: NF20939_low_1
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 8426058 - 8425634
Alignment:
| Q |
17 |
aaatcatgcatcttatgctgcactacgattctgcgttaacgagcttctcgtctttcatgcaattctaatccatcttttcagcactttgtgacattttctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8426058 |
aaatcatgcatcttatgctgcactacgattctgcgttaacgagcttctcgtctttcatgcaactctaatccatcttttcagcactttgtgacattttctg |
8425959 |
T |
|
| Q |
117 |
attaaagactttgttaatgttttatttaccaatactagttatgttgttatccacacagacaataaatgtaattgtatctttaggcaacaattaggcaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425958 |
attaaagactttgttaatgttttatttaccaatactagttatgttgttatccacacagacaataaatgtaattgtatctttaggcaacaattaggcaatt |
8425859 |
T |
|
| Q |
217 |
tgattctggttgatatggtatgttatctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425858 |
tgattctggttgatatggtatgttatctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgcca |
8425759 |
T |
|
| Q |
317 |
agttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425758 |
agttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgaca |
8425659 |
T |
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| Q |
417 |
aatatttttgaaatttttatgttct |
441 |
Q |
| |
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| T |
8425658 |
aatatttttgaaatttttatgttct |
8425634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 273 - 406
Target Start/End: Complemental strand, 8429236 - 8429103
Alignment:
| Q |
273 |
ttgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtccta |
372 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||| |
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| T |
8429236 |
ttgctaagcttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaagtcctg |
8429137 |
T |
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| Q |
373 |
cacaaattgaagaaaacctttaaaaattaataat |
406 |
Q |
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|||||| |||||||| | ||| |||||||||||| |
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| T |
8429136 |
cacaaagtgaagaaatcattttaaaattaataat |
8429103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 273 - 441
Target Start/End: Original strand, 8389743 - 8389912
Alignment:
| Q |
273 |
ttgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtccta |
372 |
Q |
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|||||||| |||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||| | ||||| |||| |||||||||||| |
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| T |
8389743 |
ttgctaaggttccaaattgcttgttccattgctcaaaaatgccaagatcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaagtcctg |
8389842 |
T |
|
| Q |
373 |
cacaaattgaagaaaacctttaaaaattaataatgaa-cctgacaaatatttttgaaatttttatgttct |
441 |
Q |
| |
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|||||| |||| ||| | |||||||||||||||| || | || ||||||||||||||||| |||||||| |
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| T |
8389843 |
cacaaagtgaataaatcatttaaaaattaataatcaatcttggaaaatatttttgaaatttctatgttct |
8389912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 264 - 432
Target Start/End: Original strand, 8396675 - 8396843
Alignment:
| Q |
264 |
tcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatctt |
363 |
Q |
| |
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||||||||| |||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||| |||| |
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| T |
8396675 |
tcctctaaacagctagggttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcagggaattctt |
8396774 |
T |
|
| Q |
364 |
gaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaattt |
432 |
Q |
| |
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||||||||||||||| |||||||| | ||| |||||||||| | | | ||| |||||||||| |||||| |
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| T |
8396775 |
gaagtcctacacaaagtgaagaaatcattttaaaattaatattcaccttgagaaatattttttaaattt |
8396843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 241 - 438
Target Start/End: Complemental strand, 8415667 - 8415489
Alignment:
| Q |
241 |
atctctttacaatgagaacatattcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggc |
340 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
8415667 |
atctccttataatgagaacatattcctctaaattgctaagcttccaaattgtt-------------------gccaaattcattaggtgaaacagaaggc |
8415587 |
T |
|
| Q |
341 |
ctcacctgttgcaaggaaatcttgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgt |
438 |
Q |
| |
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|||| | ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| | || | |||| ||||||||||||| |
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| T |
8415586 |
ttcacttcttgcagggaattcttgaagtccttcacaaattgaagaaaacctttaaaaattaataatcaaccttagaatttttttcgaaatttttatgt |
8415489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 286 - 432
Target Start/End: Complemental strand, 8410406 - 8410260
Alignment:
| Q |
286 |
aaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctacacaaattgaaga |
385 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||| || |||||||||||||||| |||||| |
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| T |
8410406 |
aaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcatggaattcatgaagtcctacacaaagtgaaga |
8410307 |
T |
|
| Q |
386 |
aaacctttaaaaattaataatgaacctgacaaatatttttgaaattt |
432 |
Q |
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|| | ||| |||||||||||| | ||| ||||||||||||||||| |
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| T |
8410306 |
aatcttttcaaaattaataatctatttgagaaatatttttgaaattt |
8410260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 432
Target Start/End: Original strand, 8391785 - 8391954
Alignment:
| Q |
263 |
ttcctctaaattgctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatct |
362 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||| ||| ||| | ||||||||||||| ||||||||||| ||| | | || || |||| || |
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| T |
8391785 |
ttcctctaaatttgtaagcttccaaattgcttgttccattcctcataaattccaagttcattagctgaaacagaagaccttatatctttcatggaattca |
8391884 |
T |
|
| Q |
363 |
tgaagtcctacacaaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaattt |
432 |
Q |
| |
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||||||||||||||| |||||||| | ||| ||||||||| || || ||| ||||||||||||||||| |
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| T |
8391885 |
agaagtcctacacaaagtgaagaaatcttttcaaaattaattatcaatttgagaaatatttttgaaattt |
8391954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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