View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20939_low_10 (Length: 250)

Name: NF20939_low_10

Description: NF20939

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20939_low_10

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 106; E-Value: 4e-53

Query Start/End: Original strand, 137 - 250

Target Start/End: Original strand, 27780900 - 27781013

Alignment:

Q	137	tttaagaatatgaatctctacaaatcgaggctagtatttagtattttgcatcaagtattgtcaagttattttcgatactattcaagctcttactatttct	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27780900	tttaagaatatgaatctctacaaattgaggctagtatttagtattttgcatcaagtattgtcaagttattttcgataatattcaagctcttactatttct	27780999	T

Q	237	ctcttatataaaac	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27781000	ctcttatataaaac	27781013	T

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Target: chr5; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 35 - 140

Target Start/End: Original strand, 27794069 - 27794164

Alignment:

Q	35	catgtcattttcctattttagttttaaaactatctatgtggtaaaacattatagaatacatgtgtgaaactattttactcgcataccaattaaattgaac	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27794069	catgtcattttcctattttagttttaaaactatctatgt----------tatagaatacatgtgtgaaactattttacttgcataccaattaaattgaac	27794158	T

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