View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20939_low_12 (Length: 239)

Name: NF20939_low_12
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20939_low_12
NF20939_low_12
[»] chr1 (18 HSPs)
chr1 (1-239)||(10993930-10994168)
chr1 (1-235)||(11005246-11005480)
chr1 (1-231)||(10901309-10901539)
chr1 (1-135)||(11032933-11033067)
chr1 (4-180)||(10979031-10979207)
chr1 (1-152)||(11007463-11007614)
chr1 (10-153)||(11010624-11010767)
chr1 (1-189)||(10932667-10932856)
chr1 (1-181)||(10914295-10914475)
chr1 (1-153)||(10903163-10903315)
chr1 (1-153)||(11028833-11028985)
chr1 (31-100)||(9348803-9348872)
chr1 (37-100)||(9234322-9234385)
chr1 (59-100)||(9255310-9255351)
chr1 (59-100)||(9318572-9318613)
chr1 (59-100)||(9319689-9319730)
chr1 (59-100)||(9350006-9350047)
chr1 (31-100)||(9384009-9384078)
[»] chr6 (1 HSPs)
chr6 (31-100)||(15927450-15927519)
[»] chr3 (1 HSPs)
chr3 (31-100)||(9159379-9159448)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10993930 - 10994168
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10993930 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 10994029  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtactagcgtttcttggtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994030 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtactagcgtttcttggtc 10994129  T
Q  201 ttcctctggtgcatcaagaattgattccatggaacaagc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10994130 ttcctctggtgcatcaagaattgattccatggaacaagc 10994168  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11005246 - 11005480
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11005246 atgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 11005345  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtactagcgtttcttggtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||| || ||||||   |||||||||    
T  11005346 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatggtaatactagaagttcttggtc 11005445  T
Q  201 ttcctctggtgcatcaagaattgattccatggaac 235  Q
    |||||||| | |||||| || ||||| ||||||||    
T  11005446 ttcctctgatacatcaataaatgatttcatggaac 11005480  T

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Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10901539 - 10901309
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  10901539 atgaaattggcaaagaaaacgatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgcat 10901440  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtactagcgtttcttggtc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||   ||| ||||     
T  10901439 aagaagatggggatttgcaaatgcctaagaagccttacctttatccacaagatctaccagctgaggatttttgagatgataatactagaagttcgtggtt 10901340  T
Q  201 ttcctctggtgcatcaagaattgattccatg 231  Q
    |||||||| | |||||| || ||||| ||||    
T  10901339 ttcctctgatacatcaataaatgatttcatg 10901309  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 11033067 - 11032933
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||| | |||||||||||||||||| |||||||||||||| | |||||||||||||    
T  11033067 atgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaag 11032968  T
Q  101 aagaagatggggatttgcaaatgcctaataagcct 135  Q
    |||||||||  ||||||||||||||||||||||||    
T  11032967 aagaagatgaagatttgcaaatgcctaataagcct 11032933  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 10979207 - 10979031
Alignment:
Q  4 aaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaag 103  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||||||||    || ||||||||||||||||||||| | ||||||||||||||||    
T  10979207 aaattggcaaagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttggagatgcttgaagaag 10979108  T
Q  104 aagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgat 180  Q
    |||||||||| |||||||| ||||||||||||||| ||| |  |||||||  ||||| ||| |||||| ||||||||    
T  10979107 aagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgttggagatgat 10979031  T

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Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 11007614 - 11007463
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||  | |||||||||||||||||| |||||||||||||| | |||||||||||||    
T  11007614 atgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaag 11007515  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaaga 152  Q
    |||||||||  |||||||||||||||||| ||||| ||||| || |||||||    
T  11007514 aagaagatgaagatttgcaaatgcctaatcagcctgaccttgatgcacaaga 11007463  T

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Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 11010767 - 11010624
Alignment:
Q  10 gcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatg 109  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  11010767 gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg 11010668  T
Q  110 gggatttgcaaatgcctaataagccttacctttatccacaagat 153  Q
    | || ||||| || ||||||||||||||| ||| ||||||||||    
T  11010667 gagacttgcagattcctaataagccttacttttgtccacaagat 11010624  T

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Target: chr1; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10932856 - 10932667
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattg-agatgcttgaa 99  Q
    |||||||||||||||||||||||||| ||||| || |||||||| || ||||| ||    ||||||||||||||||| |||||  | | |||||||||||    
T  10932856 atgaaattggcaaagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagttttaggagatgcttgaa 10932757  T
Q  100 gaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtactagc 189  Q
    |||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||  ||||| ||| |||||| ||||| |||||| ||||    
T  10932756 gaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgttggagataatagtagtagc 10932667  T

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Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 10914475 - 10914295
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||||||||||||||| || || |||||||| || ||||||||    ||||||||||||||||| |||||  | |||||||||||||    
T  10914475 atgaaattggcaaagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagttttggagatgcttgaag 10914376  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgata 181  Q
    |||||||||| || |||||||| ||||||||||||||  ||| ||||||||||  |||| |||  |||||| |||||||||    
T  10914375 aagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcagatgttggagatgata 10914295  T

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Target: chr1; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 10903315 - 10903163
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||||||||||||||  ||||| || |||||||| || ||||||||    |||||||||||||||||||||||  | ||||||||||||     
T  10903315 atgaaattggcaaagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagttttggagatgcttgaaa 10903216  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat 153  Q
    ||||||||||||| || ||||| ||||||||||||||| ||| ||||||||||    
T  10903215 aagaagatggggacttacaaattcctaataagccttacttttgtccacaagat 10903163  T

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Target: chr1; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 11028833 - 11028985
Alignment:
Q  1 atgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||||||||||| || ||| || |||||||| || ||||||||    |||||||||||||||||||||||  | |||||||||||||    
T  11028833 atgaaattggcaaagaaaatgatgactgcggctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggataaagttttggagatgcttgaag 11028932  T
Q  101 aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat 153  Q
    |||||||||| || |||||||| ||||||||||||||| ||| ||| ||||||    
T  11028933 aagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagat 11028985  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 9348803 - 9348872
Alignment:
Q  31 gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||| |||  |||||| |||||||||||| ||||| ||||||| || |||||||| ||||    
T  9348803 gcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaataaagtaatagagatgctcgaag 9348872  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 9234322 - 9234385
Alignment:
Q  37 tggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||   ||||| |||||||||||||||||| | |||||  |||||||||||||||    
T  9234322 tggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgcttgaag 9234385  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 9255310 - 9255351
Alignment:
Q  59 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  9255310 gtgatcgtccctcaatgaataaagtgatagagatgcttgaag 9255351  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 9318572 - 9318613
Alignment:
Q  59 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9318572 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9318613  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 9319730 - 9319689
Alignment:
Q  59 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9319730 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9319689  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 9350047 - 9350006
Alignment:
Q  59 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9350047 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9350006  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 9384078 - 9384009
Alignment:
Q  31 gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    ||||| ||||||||||||   ||||| |||||||||||| ||||| | |||||  |||||||||||||||    
T  9384078 gcattttggtgtattcagttgaaaccgagtgatcgtcctacaatgaacaaagtagttgagatgcttgaag 9384009  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 15927450 - 15927519
Alignment:
Q  31 gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||||||   |||||| |||||||||||||||||| | | |||||| |||||||||||||    
T  15927450 gcattatggtgtattcaattaaaaccaagtgatcgtccttcaatgaacagagtgatagagatgcttgaag 15927519  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 9159448 - 9159379
Alignment:
Q  31 gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 100  Q
    |||||||||||||| |||  |||||| |||||||||||| ||||| | ||||| || |||||||| ||||    
T  9159448 gcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaacaaagtaatagagatgctcgaag 9159379  T

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