View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_low_13 (Length: 238)
Name: NF20939_low_13
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_low_13 |
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| [»] scaffold0470 (2 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 1862 - 1738
Alignment:
| Q |
1 |
tttttattttaaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1862 |
tttttattttaaaatttggtacttgacttaaggatcgaataattcaaggggttcagtcccaccatccacttgcggagagatcctattaaagctagagcat |
1763 |
T |
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| Q |
101 |
atatctccattctgagatatgtgat |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
1762 |
atatctccattctgagatatgtgat |
1738 |
T |
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Target: scaffold0470; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 1698 - 1640
Alignment:
| Q |
163 |
aatatgaggcatatatagtagacgtagataagatagtgagagaagaaagacacaaaaga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1698 |
aatatgaggcatatatagtagacgtagataagatagtgagagaagagagacacaaaaga |
1640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6612574 - 6612450
Alignment:
| Q |
1 |
tttttattttaaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6612574 |
tttttattttaaaatttggtacttgacttaaggatcgaataattcaaggggttcagtcccaccatccacttgcggagagatcctattaaagctagagcat |
6612475 |
T |
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| Q |
101 |
atatctccattctgagatatgtgat |
125 |
Q |
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| T |
6612474 |
atatctccattctgagatatgtgat |
6612450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 6612410 - 6612352
Alignment:
| Q |
163 |
aatatgaggcatatatagtagacgtagataagatagtgagagaagaaagacacaaaaga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6612410 |
aatatgaggcatatatagtagacgtagataagatagtgagagaagagagacacaaaaga |
6612352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 6581271 - 6581180
Alignment:
| Q |
11 |
aaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcatat |
102 |
Q |
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|||| |||||| ||||| |||||| | ||||| ||||||||||||||||||||||| | || ||| ||||||||||||| |||||||||| |
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| T |
6581271 |
aaaacttggtatttgacctaaggactgcataatctgaggggttcagtcccaccatccatttgctgagggatcctattaaagttagagcatat |
6581180 |
T |
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