View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_low_2 (Length: 414)
Name: NF20939_low_2
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_low_2 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 28788 - 28634
Alignment:
| Q |
1 |
cgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaagcagctccccctgaaagccgtatggatcctt |
100 |
Q |
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| T |
28788 |
cgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaagcagctccccctgaaagccgtatggatccct |
28689 |
T |
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| Q |
101 |
tcgctcgatcggcaggctctcctccctacagagttgcttctgttagaagagaaga |
155 |
Q |
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| T |
28688 |
tcgctcgatcggcaggctctcctccctacagagttgcttctgttcgaagagaaga |
28634 |
T |
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Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 6101620 - 6101423
Alignment:
| Q |
155 |
attatattataaaacagttgctgcgaaaaaagcgcaaaccaaaagttcatgattggctagaagaactacaagaattgagagagaccgcggatggtctgaa |
254 |
Q |
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| T |
6101620 |
attatattataaaacaactgcagggaaaaaagcgcaaaccaaaagtttatgattagctagaagaactacaagaattgagagaaaccacatatggtctgaa |
6101521 |
T |
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| Q |
255 |
tacctcgatgacagttatgacataagt-aattgtcaaacaaatgaaacgacataaggaagatatacctctcattttatcgaccgaattggttggggaa |
351 |
Q |
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| T |
6101520 |
tacctcaatgacagttatgacataagtgaattgtcaaacaaatgaaatgacataaggaagatataactctcactttatcgaccgaattggttagggaa |
6101423 |
T |
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