View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20939_low_3 (Length: 410)

Name: NF20939_low_3
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20939_low_3
NF20939_low_3
[»] chr3 (16 HSPs)
chr3 (17-395)||(11490007-11490387)
chr3 (20-402)||(2920400-2920782)
chr3 (26-395)||(11496482-11496851)
chr3 (17-338)||(5966685-5967006)
chr3 (17-154)||(5052760-5052897)
chr3 (122-306)||(7489986-7490170)
chr3 (30-327)||(4130837-4131134)
chr3 (26-162)||(4079242-4079378)
chr3 (26-162)||(4059633-4059769)
chr3 (71-178)||(910714-910821)
chr3 (71-327)||(4091205-4091461)
chr3 (65-162)||(4114106-4114203)
chr3 (27-90)||(7491565-7491628)
chr3 (329-402)||(7489912-7489985)
chr3 (288-329)||(4059466-4059507)
chr3 (288-329)||(4079075-4079116)
[»] chr8 (1 HSPs)
chr8 (20-402)||(18388893-18389275)
[»] scaffold0603 (1 HSPs)
scaffold0603 (17-329)||(3758-4070)
[»] chr5 (1 HSPs)
chr5 (20-394)||(16447663-16448028)
[»] chr4 (1 HSPs)
chr4 (26-402)||(5989404-5989780)
[»] chr1 (2 HSPs)
chr1 (17-402)||(17312614-17312993)
chr1 (65-331)||(13934299-13934565)
[»] scaffold0267 (1 HSPs)
scaffold0267 (17-315)||(19566-19864)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 11490387 - 11490007
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    |||||||| || ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11490387 caattacgtgttttgtccttgtcaaactacaggagtatcaccgagattcccaactctattgaaaatttgttatgcctgcggtacttaaatctttcccaca 11490288  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacat 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| || ||||| ||    
T  11490287 ctaagattgaaaggttgccttctgcaacatgcaagctttacaatctgcagttcttgttgttggcaggctgtagaaagctcattgaatttccggaggatat 11490188  T
Q  217 ggggaaattggttaatctccgactccttgatgttagtgac---actgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttg 313  Q
    ||||||||||||||||||||| | ||||||  ||||||||   |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  11490187 ggggaaattggttaatctccgccaccttgacattagtgacagtactgcattgagggagatgcctgtacaaatagccaaactagaaaatttccatactttg 11490088  T
Q  314 tcggactttgttgtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttt 395  Q
    |||||||||||||||  |||||| || |||||||||||| |  ||||||| ||||||||||||||||| |||||||||||||    
T  11490087 tcggactttgttgtcggcaagcagaatgatggattgaaggtagcggagct-ggaaaatttccccacctacatggaaaacttt 11490007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 2920400 - 2920782
Alignment:
Q  20 ttacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacacta 119  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||     
T  2920400 ttacgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaactctattggaaatttgttatacctgcggtacttaaatctttctcatactg 2920499  T
Q  120 agattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggg 219  Q
    ||||||||||| || |||||| ||||||| ||||||||||||| || |||||||||||| |||| |||| |||  |||||||||||||||||||||||||    
T  2920500 agattgaaaggctgccttctgaaacatgccagctttacaatcttcagttcttgttgttgtcaggatgtaaaaggttcattgaattgccagaggacatggg 2920599  T
Q  220 gaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggac 319  Q
     ||||||||||||||  | | |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||     
T  2920600 aaaattggttaatctatgccaccttgacgttagtgacactgcattgagggagatgcccgtacagatagctaaactacaaaatctgcatactttgtctgat 2920699  T
Q  320 tttgttgtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttttcatctc 402  Q
    |||||||||| ||| ||||| | |||||||||| || | |||||||||||||||||||||||  |||||||| ||| ||||||    
T  2920700 tttgttgtcagcaaacataatggtggattgaaggttgcagagctaggaaaatttccccacctaaatggaaaaatttccatctc 2920782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 395
Target Start/End: Complemental strand, 11496851 - 11496482
Alignment:
Q  26 gtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattg 125  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  11496851 gtgttgtctttgtcaaactacaagagtatcaccgaggttcccaaatctattggaaatttgttatacctccggtacttaaatctttctcacactaatattg 11496752  T
Q  126 aaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggggaaatt 225  Q
    |||| ||| ||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| |||||||| ||  ||||    
T  11496751 aaagattgccttatgaaacatgcaagctttacaatctgcagttcttgttattggcaggctgtagaaggctcgttgaattgcccgaggacataggagaatt 11496652  T
Q  226 ggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggactttgtt 325  Q
    ||| ||||| |    ||||||  ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||  ||||||||    
T  11496651 ggtcaatctacagtgccttgacattagtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgtt 11496552  T
Q  326 gtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttt 395  Q
    ||||  || | ||| | |||||||| | |  | || |||||||||||||||||||| |||||||||||||    
T  11496551 gtcagtaaacgtaatggtggattgatggtagccgaactaggaaaatttccccacctacatggaaaacttt 11496482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 5966685 - 5967006
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    ||||| || |||||||||||| |||||||||  || ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5966685 caattgcgtgtgttgtctttgacaaactacaaaagcatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcaca 5966784  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacat 216  Q
    |||||||||||| |||| ||  || |||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  5966785 ctaagattgaaaagttgcctagtgaaacatgcaagctttacaatctgcagttcttgttgttgtcaggctgtaaaaggctcactgaattgccagaggacat 5966884  T
Q  217 ggggaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcg 316  Q
    ||| |||||||||| | | || |  |||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||||||  | ||||||||     
T  5966885 gggaaaattggttagtttgcgccgtcttgacattagtgacactgcattgagggagatgcccacacaaatagccaaactagaaaatcttgaaactttgtct 5966984  T
Q  317 gactttgttgtcaacaagcata 338  Q
    |||||| |||||| ||| ||||    
T  5966985 gactttcttgtcagcaaacata 5967006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 5052760 - 5052897
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5052760 caattacgcgtgttgtctttgtcaaactacaggagtatcaccgaggttcccaactctattgaaaatttgttatacctgaggtacttaaatctttcccaca 5052859  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctt 154  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5052860 ctaagattgaaaggttgccttctgcaacatgcaagctt 5052897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 122 - 306
Target Start/End: Complemental strand, 7490170 - 7489986
Alignment:
Q  122 attgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatgggga 221  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||| || |||||||| || |    
T  7490170 attgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttattgttggtaggctgtagaaggctcattgaatttccggaggacattggaa 7490071  T
Q  222 aattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctcca 306  Q
    ||||||||||||| |  | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7490070 aattggttaatctgcatcaccttgatgttagcgacactgcattgagggagatgcctgtacaaatagccaaactagaaaatctcca 7489986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 4130837 - 4131134
Alignment:
Q  30 tgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattgaaag 129  Q
    ||||||||||||||||||  | |||||| ||| ||||||| ||||||| ||||||| |||||||||| ||||||||||| || |||||| |||||  ||     
T  4130837 tgtctttgtcaaactacaagaatatcactgagtttcccaattctattggaaatttgatatacctgcgatacttaaatctctctcacactgagattagaat 4130936  T
Q  130 gttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggggaaattggtt 229  Q
    |||| |  ||| ||||||||||||||||||||||||   ||||||| || ||| ||| |  ||||| | |||||||||  | |||||||  || ||  |     
T  4130937 gttgcccgctgaaacatgcaagctttacaatctgcagaccttgttgctgtcagactgcaacagactgactgaattgccgaaagacatggcaaagttaatg 4131036  T
Q  230 aatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggactttgttgt 327  Q
    ||||| || | ||||||| | || | ||||  ||||| ||| ||||| || |||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  4131037 aatctacgtcaccttgatatcagaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgt 4131134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 4079378 - 4079242
Alignment:
Q  26 gtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattg 125  Q
    ||||||||| |||||||||||   | |||||| ||| | ||||||||||||| ||||||| |||||||||| ||||||||| | || |||||||  ||||    
T  4079378 gtgttgtctctgtcaaactaccataatatcactgagttgcccaactctattggaaatttgatatacctgcgatacttaaatgtctctcacactagtattg 4079279  T
Q  126 aaaggttgtcttctgcaacatgcaagctttacaatct 162  Q
    |||||||| |||||| |||||||||||||||||||||    
T  4079278 aaaggttgccttctgaaacatgcaagctttacaatct 4079242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 4059769 - 4059633
Alignment:
Q  26 gtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattg 125  Q
    ||||||||| |||||||||||   | |||||| | | | ||||||||||||| ||||||| |||||||||| ||||||||| | || |||||||  ||||    
T  4059769 gtgttgtctctgtcaaactaccataatatcactgcgttgcccaactctattggaaatttgatatacctgcgatacttaaatgtctctcacactagtattg 4059670  T
Q  126 aaaggttgtcttctgcaacatgcaagctttacaatct 162  Q
    |||||||| |||||| |||||||||||||||||||||    
T  4059669 aaaggttgccttctgaaacatgcaagctttacaatct 4059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 910821 - 910714
Alignment:
Q  71 tctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattct 170  Q
    |||||||  |||||| |||||||||| ||||| ||||| ||  |||||  ||||||||||||| |||||||||||||||||||||| |||||||||  ||    
T  910821 tctattgggaatttgatatacctgcgatacttgaatctctcttacactgggattgaaaggttgccttctgcaacatgcaagctttaaaatctgcaaacct 910722  T
Q  171 tgttgttg 178  Q
    ||||||||    
T  910721 tgttgttg 910714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 71 - 327
Target Start/End: Complemental strand, 4091461 - 4091205
Alignment:
Q  71 tctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattct 170  Q
    ||||||| || |||| ||||||| || ||||||||||| ||  |||||| ||||| ||||||| | |||| ||||||||||||||||||||||||   ||    
T  4091461 tctattggaagtttgatatacctacgatacttaaatctctctgacactatgattggaaggttgccctctgaaacatgcaagctttacaatctgcagacct 4091362  T
Q  171 tgttgttggcaggctgtagaagactcattgaattgccagaggacatggggaaattggttaatctccgactccttgatgttagtgacactgcattgaggga 270  Q
    |||||||| ||   ||| | |  |||| | | |||||  |||||||||||||||| || | ||| || | ||||||  | || | ||||  ||||| |||    
T  4091361 tgttgttgacaaattgttggaatctcactaatttgccgaaggacatggggaaattagtgagtctacgccaccttgacatcagaggcactcaattgaagga 4091262  T
Q  271 gatgcccgtacaaatagccaaactagaaaatctccatactttgtcggactttgttgt 327  Q
     |||||||||||| |  ||||||||||||||||||| ||  |||||  |||||||||    
T  4091261 aatgcccgtacaactctccaaactagaaaatctccaaaccctgtcgagctttgttgt 4091205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 4114203 - 4114106
Alignment:
Q  65 cccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattgaaaggttgtcttctgcaacatgcaagctttacaatct 162  Q
    ||||||||||||| ||||||| |||||||||| ||||||||| | || | |||||  ||| |||||||| |||||| |||||||||||||| ||||||    
T  4114203 cccaactctattggaaatttgatatacctgcgatacttaaatgtctctcgcactagtattcaaaggttgccttctgaaacatgcaagctttgcaatct 4114106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 7491628 - 7491565
Alignment:
Q  27 tgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttata 90  Q
    ||||||| |||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||    
T  7491628 tgttgtcattgtcaaactacaaaagtatcaccgaggttcgcaactctattggaaatttgttata 7491565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 7489985 - 7489912
Alignment:
Q  329 aacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttttcatctc 402  Q
    ||||||||| | ||| ||||||||||| | ||||| ||||||||||||||||| || |||||||||| ||||||    
T  7489985 aacaagcatgatgattgattgaagcttgcagagctgggaaaatttccccacctacagggaaaactttccatctc 7489912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 4059507 - 4059466
Alignment:
Q  288 ccaaactagaaaatctccatactttgtcggactttgttgtca 329  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  4059507 ccaaactagaaaatctacaaaccttgtcggactttgttgtca 4059466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 4079116 - 4079075
Alignment:
Q  288 ccaaactagaaaatctccatactttgtcggactttgttgtca 329  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  4079116 ccaaactagaaaatctacaaaccttgtcggactttgttgtca 4079075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 18388893 - 18389275
Alignment:
Q  20 ttacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacacta 119  Q
    |||||| || ||||||||||||||||||  |||||||| |||||||||||  | |||| |||||||||| ||||||| ||||| |||||||| || ||||    
T  18388893 ttacgcatgctgtctttgtcaaactacaagagtatcactgaggttcccaaaacaattggaaatttgttacacctgcgctacttgaatctttctcatacta 18388992  T
Q  120 agattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggg 219  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||| ||||||||| |||  ||| |||||||||| ||||||| ||    
T  18388993 agattgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttgctgttgtcaggctgtaaaaggttcactgaattgccacaggacattgg 18389092  T
Q  220 gaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggac 319  Q
     |||||||| ||||| || | |||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  18389093 aaaattggtcaatctacgtcaccttgacgttagtgacactgcactgagtgagatgcccgtacaaatagccaaactagaaaatctccacactttgtctgac 18389192  T
Q  320 tttgttgtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttttcatctc 402  Q
    || ||| ||| ||| ||||| | |||||||||| || | ||||||||||||||||| || || ||||||||||||| ||||||    
T  18389193 ttcgttatcagcaaacataatggtggattgaaggttgcagagctaggaaaatttcctcatctacatggaaaactttacatctc 18389275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 4070 - 3758
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    |||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||    
T  4070 caattacgcgtgttgtctttgtcaaattacaagagtatcactgaggttcccaactctattgcaaatttgttacaccttcagtacttaaatctttcccaca 3971  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacat 216  Q
    ||| ||||||||||||| |||||| ||| ||| |||||||||||||||| |||||||| ||| ||||||||| ||  |||| ||||||||||||||||||    
T  3970 ctatgattgaaaggttgccttctgaaacttgcgagctttacaatctgcagttcttgttattgtcaggctgtaaaaagctcactgaattgccagaggacat 3871  T
Q  217 ggggaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcg 316  Q
     || ||||||||||||||  | | |||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||| |||      
T  3870 tggaaaattggttaatctatgccaccttgacgttagtgacactgcattgacagagatgcccatacaaatagccaaactagaaaatctccacactctgtat 3771  T
Q  317 gactttgttgtca 329  Q
    |||||||||||||    
T  3770 gactttgttgtca 3758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 16447663 - 16448028
Alignment:
Q  20 ttacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacacta 119  Q
    ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| || |||| |||||||||||||| |||||||||| |||||      
T  16447663 ttacgggtgttatctttgtcaaactacagaagtatcactgaggttcccaactctattggaagtttgatatacctgcggtacctaaatctttctcacacac 16447762  T
Q  120 agattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggg 219  Q
    |||||||||||||| |||||  ||||||||||||||||||||| || |||||||||||| ||||||||| ||| |||| ||||||||| || ||||||||    
T  16447763 agattgaaaggttgccttctaaaacatgcaagctttacaatctacagttcttgttgttgtcaggctgtaaaaggctcactgaattgccggaagacatggg 16447862  T
Q  220 gaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggac 319  Q
     ||||| |||||||| |  | |||| |  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||| |||    
T  16447863 aaaattagttaatctactccaccttaacattagtgacactgcattgagggagatgcccgaacaaatagccaaactacaaaatctccaaagtttgtctgac 16447962  T
Q  320 tttgttgtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaactt 394  Q
    |||||||||| ||          |||||||||| || | |||||||||||||||||||| || ||||||||||||    
T  16447963 tttgttgtcagca---------gtggattgaagattgcagagctaggaaaatttccccaactacatggaaaactt 16448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 26 - 402
Target Start/End: Original strand, 5989404 - 5989780
Alignment:
Q  26 gtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattg 125  Q
    ||||| ||||||||||||||||  ||||||||  |||||||||| ||||||| ||||||| ||||| ||| |||||| |||||||| ||||| || ||||    
T  5989404 gtgttatctttgtcaaactacaagagtatcactaaggttcccaagtctattggaaatttggtatacttgcagtactttaatctttctcacacaaatattg 5989503  T
Q  126 aaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggggaaatt 225  Q
    |||||||| |||||| ||||||||| ||||||||||| |||||||||||||||   ||||||| ||| |||||||| || || ||||||||||| |||||    
T  5989504 aaaggttgccttctgaaacatgcaatctttacaatcttcaattcttgttgttgttgggctgtaaaaggctcattgagttaccggaggacatgggaaaatt 5989603  T
Q  226 ggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggactttgtt 325  Q
    ||| ||| | || | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||||    
T  5989604 ggtcaatttgcgccaccttgacgttaatgacactgcattgacggagatgcccgtacaaattgccaaacttgaaaatctccacactttgtccaactttgtt 5989703  T
Q  326 gtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttttcatctc 402  Q
    |||| ||| ||||  | |||| ||||| || | || |||||||| |||||||| || ||||||||||||| ||||||    
T  5989704 gtcagcaaacatattggtggactgaagattgcagaactaggaaagtttccccatctacatggaaaactttccatctc 5989780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 17312614 - 17312993
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    |||||||| | ||||||||||||||||||||  |||||||   ||||||| || ||||||| ||| ||||| | |||||||||||||||| |||| ||||    
T  17312614 caattacgtgcgttgtctttgtcaaactacaagagtatcattaaggttccgaagtctattggaaaattgtttttcctgcggtacttaaatgtttctcaca 17312713  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacat 216  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||      ||| |||||||| |||| ||| |||||||||||||||||  ||||    
T  17312714 ctaagattggaaggttgccttctgaaacatgcaagctttacaatctgca------gttcttggcaggttgtacaaggctcattgaattgccagaccacat 17312807  T
Q  217 ggggaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcg 316  Q
     ||  ||||||| |||||  |   ||||||  ||||||||||||||||||||| ||||||  |||||||| ||||| ||||||||||||| ||||||||     
T  17312808 aggagaattggtcaatctgtgctgccttgaaattagtgacactgcattgagggggatgccaatacaaatatccaaattagaaaatctccacactttgtct 17312907  T
Q  317 gactttgttgtcaacaagcataaggatggattgaagctttcggagctaggaaaatttccccacctgcatggaaaacttttcatctc 402  Q
     ||||||| ||||  || | ||| |||||||||||  || | ||||||||||||||| ||||||| ||||||||||||| ||||||    
T  17312908 aactttgtcgtcagtaaacgtaatgatggattgaactttgccgagctaggaaaatttacccacctacatggaaaactttccatctc 17312993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 13934299 - 13934565
Alignment:
Q  65 cccaactctattgaaaatttgttatacctgcggtacttaaatctttcccacactaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgc 164  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||| || | ||||  ||||  ||||||| |||||| ||||||||||||||||||||| |    
T  13934299 cccaactctattggaaatttaatatacctgcgatacttaaatctctctcgcactgggattagaaggttgccttctgaaacatgcaagctttacaatctac 13934398  T
Q  165 aattcttgttgttggcaggctgtagaagactcattgaattgccagaggacatggggaaattggttaatctccgactccttgatgttagtgacactgcatt 264  Q
    |   ||| |||||| || ||||    || ||||||||||| ||  | |||||||||||||| || ||| | || | ||||||  | || | |||| ||||    
T  13934399 agaccttattgttgtcatgctgcgatagtctcattgaattaccgaaagacatggggaaattagtgaatttacggcaccttgacatcagaggcactccatt 13934498  T
Q  265 gagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtcggactttgttgtcaac 331  Q
    |   || || || | |||||||   |||||||||||||| || || ||||| |||||||||||||||    
T  13934499 gtatgaaattcctgcacaaatattaaaactagaaaatctacaaaccttgtctgactttgttgtcaac 13934565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 19566 - 19864
Alignment:
Q  17 caattacgcgtgttgtctttgtcaaactacagcagtatcaccgaggttcccaactctattgaaaatttgttatacctgcggtacttaaatctttcccaca 116  Q
    |||||||||||| |||| |||||||||||||| |||||||||||| | ||||| ||||||| ||||||| |||  ||||| ||||||||||| ||  |||    
T  19566 caattacgcgtgctgtcgttgtcaaactacaggagtatcaccgagttgcccaattctattggaaatttgatatgtctgcgatacttaaatctctctaaca 19665  T
Q  117 ctaagattgaaaggttgtcttctgcaacatgcaagctttacaatctgcaattcttgttgttggcaggctgtagaagactcattgaattgccagaggacat 216  Q
    |   |||||||||| |  | |||| ||||||||| || |||||||||     ||||||||||   || ||| |  | ||  |||||||||| ||||||||    
T  19666 cagcgattgaaaggcttccgtctgtaacatgcaacctctacaatctgttgaccttgttgttgtttggttgttggtgtcttgttgaattgcctgaggacat 19765  T
Q  217 ggggaaattggttaatctccgactccttgatgttagtgacactgcattgagggagatgcccgtacaaatagccaaactagaaaatctccatactttgtc 315  Q
     |  |||||||||||||| || | ||||||| | || |  |||  ||||| ||||||||| ||||||||| ||| |||| ||||||| || ||||||||    
T  19766 cgtaaaattggttaatctacgccaccttgatatcagaggtactcaattgaaggagatgccagtacaaataaccagactacaaaatcttcaaactttgtc 19864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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