View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20939_low_6 (Length: 289)

Name: NF20939_low_6
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20939_low_6
NF20939_low_6
[»] chr4 (3 HSPs)
chr4 (19-280)||(53328607-53328868)
chr4 (19-278)||(22898448-22898707)
chr4 (19-278)||(22950116-22950375)
[»] chr5 (1 HSPs)
chr5 (19-278)||(26358576-26358835)
[»] chr7 (2 HSPs)
chr7 (19-278)||(39954873-39955132)
chr7 (25-260)||(10575300-10575535)
[»] chr2 (1 HSPs)
chr2 (28-278)||(41027467-41027717)
[»] chr3 (7 HSPs)
chr3 (28-275)||(21584634-21584881)
chr3 (31-278)||(24981941-24982188)
chr3 (67-227)||(24919962-24920122)
chr3 (67-275)||(24923536-24923744)
chr3 (31-275)||(31825597-31825841)
chr3 (67-275)||(24497335-24497543)
chr3 (67-233)||(25084978-25085144)
[»] chr8 (1 HSPs)
chr8 (127-260)||(14261168-14261301)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 53328868 - 53328607
Alignment:
Q  19 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  53328868 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaagaaagatcttga 53328769  T
Q  119 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  53328768 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgtt 53328669  T
Q  219 atcacgaagcaccttacggtgtcgttttgctcctccctttccaagaccctttcctcctttgc 280  Q
    ||| || || ||||||||||||||||| ||||| |||||||| | |||||||||||||||||    
T  53328668 atcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcctttgc 53328607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 22898707 - 22898448
Alignment:
Q  19 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttga 118  Q
    ||||| || ||||| |||||||| |||||||| ||||| |  | ||| ||||| ||||| || || ||||| | |||||||||||| | ||| ||||| |    
T  22898707 ttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttca 22898608  T
Q  119 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgtt 218  Q
      |||||||| || || ||||| || || ||||||||||||||||| || || |  |  || ||||||||||| || |||||||| ||||| ||||||||    
T  22898607 acacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgtt 22898508  T
Q  219 atcacgaagcaccttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
     ||||||||||||||||| ||||| |||||||| |||||||| | ||||||||| |||||    
T  22898507 gtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttt 22898448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 22950375 - 22950116
Alignment:
Q  19 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttga 118  Q
    ||||| || ||||| |||||||| |||||||| ||||| |  | ||| ||||| ||||| || || ||||| | |||||||||||| | ||| ||||| |    
T  22950375 ttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttca 22950276  T
Q  119 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgtt 218  Q
      |||||||| || || ||||| || || ||||||||||||||||| || || |  |  || ||||||||||| || |||||||| ||||| ||||||||    
T  22950275 acacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgtt 22950176  T
Q  219 atcacgaagcaccttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
     ||||||||||||||||| ||||| |||||||| |||||||| | ||||||||| |||||    
T  22950175 gtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttt 22950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 26358576 - 26358835
Alignment:
Q  19 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttga 118  Q
    ||||| || |||||||||||||| |||||||| || || || |||||||| || ||||| ||||| ||||||||||| |||||||||||||| |||||||    
T  26358576 ttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttga 26358675  T
Q  119 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgtt 218  Q
    |||| |||||||||||||||||||| |  ||||||||||| || ||||||||||| ||||| ||||||||||| || || || || ||||| || |||||    
T  26358676 gaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgtt 26358775  T
Q  219 atcacgaagcaccttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
    ||| ||||| || || || || || ||||| || |||||||| | |||||||||||||||    
T  26358776 atctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttt 26358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 39954873 - 39955132
Alignment:
Q  19 ttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttga 118  Q
    |||||||| || ||||||||||| || |||||||| || |  | ||||||||| ||||| || || ||||||||||||||||||||||||||||||||||    
T  39954873 ttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttga 39954972  T
Q  119 gaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgtt 218  Q
    |||| || ||||| ||||| ||||| |  || ||||| | ||||||||||||||| ||||| ||||||||||| |||||||| || || |||||||||||    
T  39954973 gaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgtt 39955072  T
Q  219 atcacgaagcaccttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
     || ||||| ||||| | ||| |  ||||||||||||||||| |  ||||||||||||||    
T  39955073 gtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttt 39955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 10575535 - 10575300
Alignment:
Q  25 gcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgc 124  Q
    ||||||||||||||||| ||||| ||||| || |  |  |||||||| ||||| || || ||||| |  || |||||||| |  |||||||| |  || |    
T  10575535 gcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacac 10575436  T
Q  125 cacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacg 224  Q
    | |  ||||| |||||||| || |||||||| |  |||||||| || | ||| || |  |||||||| || ||||||||||||||||||||||| |||||    
T  10575435 ctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacg 10575336  T
Q  225 aagcaccttacggtgtcgttttgctcctccctttcc 260  Q
     || ||||| || ||||  ||||| || ||||||||    
T  10575335 gagaaccttgcgatgtctctttgcacccccctttcc 10575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 41027717 - 41027467
Alignment:
Q  28 taaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccac 127  Q
    |||||||||||||| |||||||||||||| |  | ||| ||||||||||| || || ||||||||||| |||||||| | ||||||||| |  |||||||    
T  41027717 taaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacacgccac 41027618  T
Q  128 gagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaag 227  Q
    | || ||||| ||||| || || || ||||||||||| || || |  | ||| | ||||||||| |||||||| || |||||||| ||||||||||||||    
T  41027617 gtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaag 41027518  T
Q  228 caccttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
    ||||||||||||||||||||||||||||||||| |  |||||||| |||||    
T  41027517 caccttacggtgtcgttttgctcctccctttcccaatccctttccaccttt 41027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 275
Target Start/End: Original strand, 21584634 - 21584881
Alignment:
Q  28 taaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattct-caagaaagatcttgagaacgcca 126  Q
    |||||||||||||| ||||| |||||||| |  |  |||||||| ||||| || || ||||||||||||||||||| ||||||| ||||| ||||| ||     
T  21584634 taaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaa-atcttaagaactcct 21584732  T
Q  127 cgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaa 226  Q
    |  ||||| ||||| || || |||||||| | ||| |||||||| | ||| || |  |||||||| || ||||| |||||||| || |||||||||||||    
T  21584733 cttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaa 21584832  T
Q  227 gcaccttacggtgtcgttttgctcctccctttccaagaccctttcctcc 275  Q
    | || || | |||||  ||||| ||||||||||| || ||||| |||||    
T  21584833 gaactttcctgtgtctctttgcacctccctttcctagtcccttacctcc 21584881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 24982188 - 24981941
Alignment:
Q  31 acaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgag 130  Q
    ||||||||||| || ||||||||||| |  | ||| ||||| ||||| || ||||||||||| || |||||||| |  |||||||| |  || || |  |    
T  24982188 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 24982089  T
Q  131 tttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaagcac 230  Q
    |||||||||| || || |||||||| | ||| |||||||| | |||||| |  |||||||| |||||||| ||||| || ||||||||||||||||| ||    
T  24982088 tttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 24981989  T
Q  231 cttacggtgtcgttttgctcctccctttccaagaccctttcctccttt 278  Q
     || |  || |  ||||| ||||||||||| || ||||| ||||||||    
T  24981988 tttcctatgcctctttgcacctccctttcctagtcccttacctccttt 24981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 24919962 - 24920122
Alignment:
Q  67 tgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacac 166  Q
    ||||| ||||| || || ||||||||||| |||||||| |  |||||||| |  || || |  |||||||||||||| || || ||||| | ||||||||    
T  24919962 tgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacac 24920061  T
Q  167 caccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaag 227  Q
    |||| | |||||| |  ||||||||||||||||| ||||| || |||||||||||||||||    
T  24920062 cacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaag 24920122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 24923536 - 24923744
Alignment:
Q  67 tgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacac 166  Q
    ||||| ||||| || || ||||||||||| |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||    
T  24923536 tgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 24923635  T
Q  167 caccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaagcaccttacggtgtcgttttgctcctccctttccaagacc 266  Q
    |||| | |||||| |  |||||||| |||||||| ||||| || ||||||||||||||||| ||||| |  || |  ||||| ||||||||||| || ||    
T  24923636 cacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcc 24923735  T
Q  267 ctttcctcc 275  Q
    ||| |||||    
T  24923736 cttacctcc 24923744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 31825597 - 31825841
Alignment:
Q  31 acaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgag 130  Q
    ||||||||||| || ||||| ||||| |  | ||| ||||| ||||| ||||| |||||||| || |||||||| |  |||||||| |  || || | ||    
T  31825597 acaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctag 31825696  T
Q  131 tttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaagcac 230  Q
    ||||||||||||| || |||||||| | |||||||||||| | ||| || |  |||||||| |||||||| ||||| || |||||||| || || || ||    
T  31825697 tttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaac 31825796  T
Q  231 cttacggtgtcgttttgctcctccctttccaagaccctttcctcc 275  Q
     || | ||| | |||||| ||||||||||| || ||||| |||||    
T  31825797 ttttctgtgcctttttgcacctccctttcctagccccttacctcc 31825841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 24497335 - 24497543
Alignment:
Q  67 tgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacac 166  Q
    ||||| ||||| || ||||||||||| |||||||| || |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||    
T  24497335 tgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacac 24497434  T
Q  167 caccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaagcaccttacggtgtcgttttgctcctccctttccaagacc 266  Q
    |||| | |||||| |  |||||||| |||||||| ||||| || |||||||| |||||||| ||||| |  || |  ||||| ||||||||||| || ||    
T  24497435 cacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcc 24497534  T
Q  267 ctttcctcc 275  Q
    ||| |||||    
T  24497535 cttacctcc 24497543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 25085144 - 25084978
Alignment:
Q  67 tgctctgtgtaggtgactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacac 166  Q
    ||||| ||||| || ||||||||||| ||||||||||| |  |||||||| |  || || |  ||||||||||| || || |||||||| | ||||||||    
T  25085144 tgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacac 25085045  T
Q  167 caccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaagcacctt 233  Q
    |||| | ||| || |  | |||||| |||||||| ||||| || ||||||||||||||||| |||||    
T  25085044 cacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctt 25084978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 14261168 - 14261301
Alignment:
Q  127 cgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaattgcaggctttgtgattccttggatgttatcacgaa 226  Q
    |||||||||||||| || || || ||||| | ||||||||| || | ||| || |  || ||||| || ||||||||||||||||||||||| |||||||    
T  14261168 cgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaa 14261267  T
Q  227 gcaccttacggtgtcgttttgctcctccctttcc 260  Q
    |||| || || ||||  ||||| |||||||||||    
T  14261268 gcactttgcgatgtctctttgcacctccctttcc 14261301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University