View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20939_low_9 (Length: 250)
Name: NF20939_low_9
Description: NF20939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20939_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42470724 - 42470964
Alignment:
| Q |
1 |
ttttgtttatttgaatttacttctctgcttgcttgttacacaagttaaa-tgttttgcttgtgttgtatcaggttccaaagactggtaaaggaaagaaaa |
99 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470724 |
ttttgtttatttgaattttcttctctgcttgcttgttacacaagttaaaatgttttgcttgtgttgtatcaggttccaaagactggtaaaggaaagaaaa |
42470823 |
T |
|
| Q |
100 |
aggctcagccagtaaacaaagatagattcataagcaaaatgtttcttcgtggagattctgtcatcattgttcttaggaaccccaaataaactactatctc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470824 |
aggctcagccagtaaacaaagatagattcataagcaaaatgtttcttcgtggagattctgtcatcattgttcttaggaaccccaaataaactactatctc |
42470923 |
T |
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| Q |
200 |
catcattctttcatagtaattggctcttgtttttgcctttg |
240 |
Q |
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| T |
42470924 |
catcattctttcatagtaattggctcttgtttttgcctttg |
42470964 |
T |
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Back To:
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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 44692487 - 44692331
Alignment:
| Q |
46 |
taaatgttttgcttgtgttgtatcaggttccaaagactggtaaaggaaagaaaaaggctcagccagtaaacaaagatagattcataagcaaaatgtttct |
145 |
Q |
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|||||||| ||||||| | ||||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||| | ||||| ||||||||||| || |
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| T |
44692487 |
taaatgttctgcttgtat-gtatcaggtgcctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagcaaaatgttcct |
44692389 |
T |
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| Q |
146 |
tcgtggagattctgtcatcattgttcttaggaaccccaaataaactactatctccatc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
44692388 |
tcgtggagattctgtcatcattgttcttaggaaccccaaataagctagtatctccatc |
44692331 |
T |
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