View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2093_high_13 (Length: 217)
Name: NF2093_high_13
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 31454290 - 31454488
Alignment:
| Q |
17 |
atatgaaagtaaaaccaattttttcacatagttctaacctttgtcataacttgtactatgatagattgaaatatatgatcaaatacag-------nnnnn |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454290 |
atatgaaagtaaaaccaattttttcacatagttctaacctttgtcataacttgtactatgatagattgaaatatatgatcaaatacagtttttttttttt |
31454389 |
T |
|
| Q |
110 |
nnnnnccctttagggtaggttaagatttttcagtggccatgaatttataggttttgtttgtgttaaatgagtgtgtttgttaagtgtcttcatctcact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31454390 |
tttttccctttagggtaggttaagatttttcagtggccatgaaattataggttttgtttgtgttaaatgagtgtgtttgttaagtgtcttcatgtcact |
31454488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 35710309 - 35710355
Alignment:
| Q |
58 |
tgtcataacttgtactatgatagattgaaatatatgatcaaatacag |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
35710309 |
tgtcataacttgtactataatagattgacatatacgatcaaatacag |
35710355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 75364 - 75410
Alignment:
| Q |
58 |
tgtcataacttgtactatgatagattgaaatatatgatcaaatacag |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
75364 |
tgtcataacttgtactataatagattgacatgtatgatcaaatacag |
75410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 41361697 - 41361741
Alignment:
| Q |
60 |
tcataacttgtactatgatagattgaaatatatgatcaaatacag |
104 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
41361697 |
tcataacttgtactataatagattgacatatacgatcaaatacag |
41361741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 20510984 - 20511029
Alignment:
| Q |
58 |
tgtcataacttgtactatgatagattgaaatatatgatcaaataca |
103 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
20510984 |
tgtcataacttgtactataatatattgacatatacgatcaaataca |
20511029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University