View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2093_low_10 (Length: 273)
Name: NF2093_low_10
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45683198 - 45682936
Alignment:
| Q |
1 |
atttagtcctcaatcgttatagtaggtagattctaagatagtttttaatatcaaaagttgtgaggttgaaattattctttagtacataatatgttgttgt |
100 |
Q |
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| T |
45683198 |
atttagtcctcaatcgttatagtaggtagatactaagatagtttttaatatcaaaagttgtgaggttgaaattattctttagtacataatatgttgttgt |
45683099 |
T |
|
| Q |
101 |
taagtatcatgttctgtagctcgctttgtctttatgctttcaaattaatcctgtatattccttctaaaattctttcatctgaatgtccaggatccttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45683098 |
taagtatcatgttctgtagctcgctttgtctttatgctttcaaattaatcctgtatattccttctaaaattctttcatctgaatgtccaggatccttgtc |
45682999 |
T |
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| Q |
201 |
gccctggagtcaaagaggctgtgagattatgcactgaggctggtgttaaggtaaagttttcat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45682998 |
gccctggagtcaaagaggctgtgagattatgcactgaggctggtgttaaggtaaagttttcat |
45682936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 1444423 - 1444489
Alignment:
| Q |
188 |
caggatccttgtcgccctggagtcaaagaggctgtgagattatgcactgaggctggtgttaaggtaa |
254 |
Q |
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| T |
1444423 |
caggatccttgtcgccctggtgtcaaagatgccgtgagaatatgcactgacgctggtgttaaggtaa |
1444489 |
T |
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