View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2093_low_11 (Length: 240)
Name: NF2093_low_11
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28753810 - 28753588
Alignment:
| Q |
1 |
ttataatctacacaatataaaagctgaccgaaactgaaacctctatgttcttaattatggtgatagcatgtgatgagttgccaacttttttagataatat |
100 |
Q |
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| T |
28753810 |
ttataaactacacaatataaaagctgaccgaaactgaaacctctatgttcttaattatggtgatagcatg--atgagttgccaacttttttagataatat |
28753713 |
T |
|
| Q |
101 |
tgctttgataaaatagattaatatgtattttagttccttttcttttatctaacatttattaattattgtacataacaggttttactttgatttttctgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28753712 |
tgctttgataaaatagattaatatgtattttagttccttttcttttatctaacatttattatttattgtacataacaggttttactttgatttttctgct |
28753613 |
T |
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| Q |
201 |
acctatgtgggggttgggatgatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
28753612 |
acctatgtgggggttgggatgatat |
28753588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28739855 - 28739633
Alignment:
| Q |
1 |
ttataatctacacaatataaaagctgaccgaaactgaaacctctatgttcttaattatggtgatagcatgtgatgagttgccaacttttttagataatat |
100 |
Q |
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|||||| ||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28739855 |
ttataaactatacaatataaaagttgaccaaaactgaaacctctatgttctcaattatggtgatagcatg--atgagttgccaacttttttagataatat |
28739758 |
T |
|
| Q |
101 |
tgctttgataaaatagattaatatgtattttagttccttttcttttatctaacatttattaattattgtacataacaggttttactttgatttttctgct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
28739757 |
tgctttgataaaatagattaatatgtattttagctccttttcttttatttaacatttattatttaatgtacataacaggttctactttgatttttctgct |
28739658 |
T |
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| Q |
201 |
acctatgtgggggttgggatgatat |
225 |
Q |
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| T |
28739657 |
acctatgtgggggttgggatgatat |
28739633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28749797 - 28749575
Alignment:
| Q |
1 |
ttataatctacacaatataaaagctgaccgaaactgaaacctctatgttcttaattatggtgatagcatgtgatgagttgccaacttttttagataatat |
100 |
Q |
| |
|
|||||| ||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28749797 |
ttataaactatacaatataaaagttgaccaaaactgaaacctctatgttctcaattatggtgatagcatg--atgagttgccaacttttttagataatat |
28749700 |
T |
|
| Q |
101 |
tgctttgataaaatagattaatatgtattttagttccttttcttttatctaacatttattaattattgtacataacaggttttactttgatttttctgct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
28749699 |
tgctttgataaaatagattaatatgtattttagctccttttcttttatttaacatttattatttaatgtacataacaggttctactttgatttttctgct |
28749600 |
T |
|
| Q |
201 |
acctatgtgggggttgggatgatat |
225 |
Q |
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| T |
28749599 |
acctatgtgggggttgggatgatat |
28749575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 39943126 - 39943315
Alignment:
| Q |
36 |
gaaacctctatgttcttaattatggtgatagcatgtgatgagttgccaacttttttagataatattgctttgataaaatagattaatatgtattttagtt |
135 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||||||| ||||||||| ||| ||||||||| | ||||||||||||||||||| |||||||| |
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| T |
39943126 |
gaaacctctatgttctcaattatggtgataggatg--atgagttagcaacttttt-agaaaatattgctgttataaaatagattaatatgtgttttagtt |
39943222 |
T |
|
| Q |
136 |
ccttttcttttatctaacatttattaattat---tgtacataacaggttttactttgatttttctgctacctatgtgggggttgggatgatat |
225 |
Q |
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||||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943223 |
ccttttcttttatttaacatttattatttatttatgtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatat |
39943315 |
T |
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