View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2093_low_17 (Length: 216)
Name: NF2093_low_17
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 29098248 - 29098430
Alignment:
| Q |
17 |
taaagttataatacttacttcctcataaatcaaccgacttgattattatatcagcatttttctt-ggacttcattataagctctgcattgagtctgtcgt |
115 |
Q |
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| T |
29098248 |
taaagttataatacttacttcctcagaaatcaaccgacttgattattatatcagcatttttctttggacttcattataagttctgcattgagtctgtcgt |
29098347 |
T |
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| Q |
116 |
tgttctctattcgctgcttagcaatgtctggaggcttgccagtagagatatgcctcttcaaaactcgctgcattgctttatca |
198 |
Q |
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| T |
29098348 |
tgttctctattcgctgcttagcaatgtctggaggcttgccagtagagatatgcctcttcaaaactcgctgcattgctttatca |
29098430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 27021319 - 27021156
Alignment:
| Q |
35 |
ttcctcataaatcaaccgacttgattattatatcagcatttttcttggacttcattataagctctgcattgagtctgtcgttgttctctattcgctgctt |
134 |
Q |
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| T |
27021319 |
ttcctcagaaatcaaccgaattgattattatatcagcatttttcttggacttcattataagttctccattgattctgtcgttgttctctatccgctgctt |
27021220 |
T |
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| Q |
135 |
agcaatgtctggaggcttgccagtagagatatgcctcttcaaaactcgctgcattgctttatca |
198 |
Q |
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| T |
27021219 |
agcaatgtctggaggcttgccaatagagatatgcctcttcaaaactcgctgcattgctttatca |
27021156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 38534857 - 38534947
Alignment:
| Q |
35 |
ttcctcataaatcaaccgacttgattattatatcagcatttttcttggacttcattataagctctgcattgagtctgtcgttgttctctat |
125 |
Q |
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| T |
38534857 |
ttcctcagaaatcaaccgacttgattattatatcagcatttttcttggacttcattataagttctgcattgagtctgtcgttgttctctat |
38534947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 38535199 - 38535242
Alignment:
| Q |
154 |
ccagtagagatatgcctcttcaaaactcgctgcattgctttatc |
197 |
Q |
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| T |
38535199 |
ccagtagagatatgcctcttcaaaactcgctgcattgctttatc |
38535242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 38535064 - 38535092
Alignment:
| Q |
127 |
cgctgcttagcaatgtctggaggcttgcc |
155 |
Q |
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| T |
38535064 |
cgctgcttagcaatgtctggaggcttgcc |
38535092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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