View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2093_low_2 (Length: 445)

Name: NF2093_low_2
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2093_low_2
NF2093_low_2
[»] chr3 (10 HSPs)
chr3 (13-431)||(47527893-47528311)
chr3 (331-431)||(47549895-47549995)
chr3 (13-295)||(47522230-47522506)
chr3 (17-163)||(47527765-47527911)
chr3 (50-130)||(47527666-47527746)
chr3 (333-423)||(47522589-47522679)
chr3 (145-229)||(47527827-47527911)
chr3 (160-243)||(47527644-47527727)
chr3 (172-243)||(47522191-47522262)
chr3 (52-166)||(47527599-47527716)
[»] chr7 (4 HSPs)
chr7 (266-407)||(44871616-44871757)
chr7 (13-156)||(44871849-44871992)
chr7 (11-230)||(44871973-44872195)
chr7 (15-235)||(44871902-44872125)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 47527893 - 47528311
Alignment:
Q  13 gagagaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatt 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47527893 gagagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaatt 47527992  T
Q  113 tattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  47527993 tattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattacagccgaaaaagcaaccaa 47528092  T
Q  213 atgaatccgaggaagcagcagcaatagcaatgtctttgaaatcctttgaatttacttctaatgaggattctgaagcctctagtttcatttctgttaaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528093 atgaatccgaggaagcagcagcaatagcaatgtctttgaaatcctttgaatttacttctaatgaggattctgaagcctctagtttcatttctgttaaaaa 47528192  T
Q  313 agccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattcaatctaaaccagaagttactaattcggtgggtagtggtaaaagaggg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528193 agccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattcaatctaaaccagaagttactaattcggtgggtagtggtaaaagaggg 47528292  T
Q  413 aaggtattaaagagagaag 431  Q
    |||||||||||||||||||    
T  47528293 aaggtattaaagagagaag 47528311  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 47549895 - 47549995
Alignment:
Q  331 atcaacatcaacggaaaatgagaagcatgtgattcaatctaaaccagaagttactaattcggtgggtagtggtaaaagagggaaggtattaaagagagaa 430  Q
    |||||| |||| |||||||||||| ||||||| ||||||| || |||||||| ||||||| |||| |||||||||||||||||| ||| ||||||| |||    
T  47549895 atcaacttcaaaggaaaatgagaaacatgtgagtcaatctgaatcagaagtttctaattcagtggatagtggtaaaagagggaaagtactaaagagggaa 47549994  T
Q  431 g 431  Q
    |    
T  47549995 g 47549995  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 47522230 - 47522506
Alignment:
Q  13 gagagaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatt 112  Q
    |||||||||||||||| ||| || || | || |||| | |||||| ||||| |||||||||| || | |||||| | |||||||||||||||||| |||     
T  47522230 gagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatc 47522329  T
Q  113 tattcgtttccattacagataaaagagcaatggagagaatc---tgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaac 209  Q
    |||| || |||||| | |   |||||| ||  |||||||||    || ||||||||| |||  ||||||||| ||||||||||         ||||| ||    
T  47522330 tattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagcaactacaatttctttgtctccatt---------aaagcgac 47522420  T
Q  210 caaatgaatccgaggaagcagcagcaatagcaatgtctttgaaatcctttgaatttacttctaatgaggattctgaagcctctagt 295  Q
    | | ||||||||||||||||||||||||| |||| ||||   ||||   |||||  |||||| |||| ||||||||||||||||||    
T  47522421 cgagtgaatccgaggaagcagcagcaatatcaatttcttctgaatcagatgaatcaacttctgatgacgattctgaagcctctagt 47522506  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 47527765 - 47527911
Alignment:
Q  17 gaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttatt 116  Q
    ||||| |||| | |||||| ||||| |||||  ||||||||||| |||||||  ||||||||| ||| ||   | |||||||||||||||  ||||| ||    
T  47527765 gaatccgaggtatcagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttctt 47527864  T
Q  117 cgtttccattacagataaaagagcaatggagagaatctgatgaagca 163  Q
    ||| |||||||||| | |||||||||  |||||||||||| ||||||    
T  47527865 cgtctccattacagttgaaagagcaaccgagagaatctgaggaagca 47527911  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 47527666 - 47527746
Alignment:
Q  50 ttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacag 130  Q
    |||||||||||||||||||||||||||||| ||||||   ||||||||||||||| || ||| ||||| | ||||||||||    
T  47527666 ttgtctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacag 47527746  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 47522589 - 47522679
Alignment:
Q  333 caacatcaacggaaaatgagaagcatgtgattcaatctaaaccagaagttactaattcggtgggtagtggtaaaagagggaaggtattaaa 423  Q
    ||||||||| |||||||||||||||||||| | ||| | || ||||| ||| | ||||||| ||||||| ||||||||| ||||| |||||    
T  47522589 caacatcaatggaaaatgagaagcatgtgagtaaatttgaatcagaacttaatgattcggtaggtagtgataaaagaggaaaggttttaaa 47522679  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 47527827 - 47527911
Alignment:
Q  145 gagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagca 229  Q
    ||||| |||||||||||||||| ||| ||||||||||  ||||||||||| || |||| ||||||| |  ||||| |||||||||    
T  47527827 gagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgaggaagca 47527911  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 47527644 - 47527727
Alignment:
Q  160 agcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaat 243  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| ||| ||  |  ||||| |||||||||||||||||| ||||    
T  47527644 agcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaat 47527727  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 47522191 - 47522262
Alignment:
Q  172 aacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaat 243  Q
    ||||||||||||||||||||| | ||||||||||  ||| |  ||||| |||||| ||||||||||| ||||    
T  47522191 aacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaat 47522262  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 47527599 - 47527716
Alignment:
Q  52 gtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaa---tttattcgtttccattacagataaaagagcaatggaga 148  Q
    |||||||||||||||||| |||| |||| |||||| |  ||||||||||||||||  ||   ||| || || ||||||||||   ||||||| |  ||||    
T  47527599 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgaga 47527698  T
Q  149 gaatctgatgaagcagca 166  Q
    |||||||| |||||||||    
T  47527699 gaatctgaggaagcagca 47527716  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 266 - 407
Target Start/End: Complemental strand, 44871757 - 44871616
Alignment:
Q  266 acttctaatgaggattctgaagcctctagtttcatttctgttaaaaaagccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattc 365  Q
    |||||| |||||||||||||| ||||| ||| || ||||||||||||||| ||||||||||   |||||||| ||| |||||||||||| ||||||| ||    
T  44871757 acttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgtgagtc 44871658  T
Q  366 aatctaaaccagaagttactaattcggtgggtagtggtaaaa 407  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  44871657 aatctgaaccagaagttacaaattcggtgggtagtggtaaaa 44871616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 44871992 - 44871849
Alignment:
Q  13 gagagaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatt 112  Q
    ||||||||| |||||||||||||  ||||||||||  |||||||||||||||||||||||| |||||  ||||| |||||||| ||||||| ||| ||||    
T  44871992 gagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaagcagcagcatcaatt 44871893  T
Q  113 tattcgtttccattacagataaaagagcaatggagagaatctga 156  Q
    ||||| | || ||||||  | |||||||||   |||||||||||    
T  44871892 tattcttctcaattacatttgaaagagcaacccagagaatctga 44871849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 44872195 - 44871973
Alignment:
Q  11 cagagagaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaa 110  Q
    |||||| ||||  |||||||||||| ||||||||||   |||||| ||||||||||||| ||||||| | |||||| | ||||| |||||||||||| ||    
T  44872195 cagagaaaatccaaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaa 44872096  T
Q  111 tttattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaa---caatttctctgtctccattactgtcgaaaaagca 207  Q
    |||||| |  ||| ||||||   |||||||||  |||| |||| || ||||||||| ||| ||   ||||||||   |||||||||| || ||||  |||    
T  44872095 tttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgca 44871996  T
Q  208 accaaatgaatccgaggaagcag 230  Q
    ||| |  ||||||||||||||||    
T  44871995 accgagagaatccgaggaagcag 44871973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 44872125 - 44871902
Alignment:
Q  15 gagaatctgaggaagcagtagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacatta---at 111  Q
    ||||||| |||||| ||| || || | || |||| ||| |||| |||||||||||||||| |||| || ||| | ||||||||||| |||||  |   ||    
T  44872125 gagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaat 44872026  T
Q  112 ttattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaacca 211  Q
    || ||| | |||||||||| | |||| ||||  ||||||||| || ||||||| | | | | || ||||| |||||||||||| ||||||| ||  ||      
T  44872025 ttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactg 44871926  T
Q  212 aatgaatccgaggaagcagcagca 235  Q
    || |||||| |||||| |||||||    
T  44871925 aaagaatccaaggaagaagcagca 44871902  T

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