View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2093_low_7 (Length: 288)
Name: NF2093_low_7
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5173353 - 5173083
Alignment:
| Q |
1 |
ggtcaaagtactgaagatttttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaa |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
5173353 |
ggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttggaaggaa |
5173254 |
T |
|
| Q |
101 |
tatatcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173253 |
tatatcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaata |
5173154 |
T |
|
| Q |
201 |
ttgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173153 |
ttgttgctagagaggtccatcagtatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
5173083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4842169 - 4842442
Alignment:
| Q |
1 |
ggtcaaagtactgaagatttttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaa |
100 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| |||| |||||||| |||||||||||| |
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| T |
4842169 |
ggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaa |
4842268 |
T |
|
| Q |
101 |
tata------tcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagcca |
194 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4842269 |
tataccaatatcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccaacattatttatcaaccaacttgggagtgagc-- |
4842366 |
T |
|
| Q |
195 |
acaatattgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842367 |
-caatattgttgctagagaggtccatcactatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
4842442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5182688 - 5182412
Alignment:
| Q |
1 |
ggtcaaagtactgaagatttttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaa |
100 |
Q |
| |
|
|||| ||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
5182688 |
ggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaa |
5182589 |
T |
|
| Q |
101 |
tata------tcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagcca |
194 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||||| ||||||||| | ||| || ||||| ||||||||||||||||| ||| ||| |
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| T |
5182588 |
tataccaatatcttttggaagcaaaccactcaaattgttgtttgatatatccaaataattcatgttatgattatctatcaaccaacttgggaatgaacca |
5182489 |
T |
|
| Q |
195 |
acaatattgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
|| | |||||| || |||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5182488 |
actaaattgtttctggagaggtccaagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctccttt |
5182412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 5196069 - 5195810
Alignment:
| Q |
20 |
tttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaat------atatcttctgga |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||| |||| |
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| T |
5196069 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttgga |
5195970 |
T |
|
| Q |
114 |
agcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaacca---acttgggagtgagccaacaatattgttgctag |
210 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||||||| | |
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| T |
5195969 |
agcaaaccactcaaattgttgtttgatatatccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagccatttatattgttgctgg |
5195870 |
T |
|
| Q |
211 |
agaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttcctt |
270 |
Q |
| |
|
||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5195869 |
agaggaccaagtataccaaattatattgatatgaaagaaaagtaggaatgacacttcctt |
5195810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 7142606 - 7142346
Alignment:
| Q |
20 |
tttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaatata------tcttctgga |
113 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||| |||| || |||||||||||||||| ||||||||| |
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| T |
7142606 |
tttcatcataccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctgga |
7142507 |
T |
|
| Q |
114 |
agcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaa---cttgggagtgagccaacaatattgttgctag |
210 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| |||||||||| ||||||||||||||||| |||||||| || | |
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| T |
7142506 |
agcaaaccacttaaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagccaactatattgtttctgg |
7142407 |
T |
|
| Q |
211 |
agaggtccatcagaat--caaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
||||||||| ||||| |||||||| |||||| |||| |||| ||||||||||| ||||||| |
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|
| T |
7142406 |
agaggtcca--agaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttccttt |
7142346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 4856686 - 4856918
Alignment:
| Q |
44 |
tatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaatata------tcttctggaagcaaaccactaaaattgttgttt |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||| |
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|
| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
|
| Q |
138 |
gatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgttgctagagaggtccatcagaatcaaattatatt |
237 |
Q |
| |
|
|||| ||||||||| | ||| || ||||| ||||||| ||||||||| ||| ||||| | |||||| || |||||||||| | | ||||||||||| |
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|
| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttgggaatgaaccaactaaattgtttctggagaggtccaagaataccaaattatatt |
4856885 |
T |
|
| Q |
238 |
gataagaaagaaaagtaggaatgacacttcctt |
270 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
4856886 |
gatatgaaagaaaagtaggaatgacacttcctt |
4856918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 5160426 - 5160167
Alignment:
| Q |
18 |
tttttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaatatatc------ttctg |
111 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||| ||| |||||||||| ||| || || |
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|
| T |
5160426 |
ttttttatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttg |
5160327 |
T |
|
| Q |
112 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgttgctaga |
211 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||| | ||| || ||||| |||||||||||||||| ||||||||| || ||||| | || |
|
|
| T |
5160326 |
ttagcaacccacttaaattgttgtttgatatatccaaataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccgga |
5160227 |
T |
|
| Q |
212 |
gaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160226 |
aaggtccaccaacatcaaattgtattgataagaaagaaaagtaggaatgacacttccttt |
5160167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5214245 - 5213972
Alignment:
| Q |
1 |
ggtcaaagtactgaagatttttcatcttaccaattgaagaaggtatatttccttcaaagctattccttgaaaagttcaaataggtaatactaggaaggaa |
100 |
Q |
| |
|
|||| ||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||| |||||||| |||||||||||| |
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|
| T |
5214245 |
ggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaa |
5214146 |
T |
|
| Q |
101 |
t------atatcttctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagcca |
194 |
Q |
| |
|
| ||||||| |||||| |||||||| ||| ||||| |||||| ||||||||||| || | | || ||| ||||| ||||||| | | ||| |
|
|
| T |
5214145 |
tataccaatatcttttggaagaaaaccacttaaactgttgattgatatatccaaatatttcat---agaagaatgtatgaaccatcttgggaataaacca |
5214049 |
T |
|
| Q |
195 |
acaatattgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttccttt |
271 |
Q |
| |
|
|| | |||||||| || |||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5214048 |
accaatttgttgctggataggtccatcaatatcaaactatattgatatgaaagaaaagtaggaatgacacttccttt |
5213972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 5203345 - 5203283
Alignment:
| Q |
143 |
atccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgtt |
205 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| || ||||| |
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|
| T |
5203345 |
atccaaatattgtatatcatcattatgtatcaaccaacttgggaatgagccaactattttgtt |
5203283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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