View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2093_low_9 (Length: 273)
Name: NF2093_low_9
Description: NF2093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2093_low_9 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2153699 - 2153465
Alignment:
| Q |
1 |
ccaccatgccatgtagctactttcaccaaggaaaatctctggtgacactgcatattccttgagcaatccatacacataattctcaaattcaaccaagttt |
100 |
Q |
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| T |
2153699 |
ccaccatgccatgtagctactttcactaaggaaaatctctggtgacactgcatattccttgagcaatccatacacataattctcaaattcaaccaatttt |
2153600 |
T |
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| Q |
101 |
cttgttgcctcatccttttcaatgtcactagatttttcaaccaatttcttgcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagag |
200 |
Q |
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| T |
2153599 |
cttgttgcctcatccttttcaatgtcactaagtttttcatccaattttttgcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagag |
2153500 |
T |
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| Q |
201 |
ttaaaattgattccacattctctctagtaacattt |
235 |
Q |
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| T |
2153499 |
ttaaaattgattccactttatctttagtaacattt |
2153465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 2168780 - 2168722
Alignment:
| Q |
163 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattct |
221 |
Q |
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| T |
2168780 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattct |
2168722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 2180413 - 2180355
Alignment:
| Q |
163 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattct |
221 |
Q |
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| T |
2180413 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattct |
2180355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 2162617 - 2162573
Alignment:
| Q |
163 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaat |
207 |
Q |
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| T |
2162617 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaat |
2162573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 2207637 - 2207604
Alignment:
| Q |
163 |
agcctcttcaacatatgcccaaaagcaagaatct |
196 |
Q |
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| T |
2207637 |
agcctcttcaacatgtgcccaaaagcaagaatct |
2207604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 27784894 - 27784970
Alignment:
| Q |
151 |
gcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattctctctag |
227 |
Q |
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| T |
27784894 |
gcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctag |
27784970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 14487 - 14531
Alignment:
| Q |
163 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaat |
207 |
Q |
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| T |
14487 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaat |
14531 |
T |
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