View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20940_high_1 (Length: 911)

Name: NF20940_high_1
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20940_high_1
NF20940_high_1
[»] chr3 (28 HSPs)
chr3 (177-682)||(27398726-27399224)
chr3 (186-550)||(823375-823739)
chr3 (234-489)||(25594521-25594775)
chr3 (236-486)||(30935394-30935644)
chr3 (288-533)||(5556449-5556694)
chr3 (403-553)||(1652824-1652973)
chr3 (372-550)||(47945668-47945846)
chr3 (243-550)||(25647517-25647826)
chr3 (393-489)||(37123366-37123462)
chr3 (395-550)||(14879421-14879576)
chr3 (419-489)||(19176512-19176582)
chr3 (419-485)||(33143954-33144020)
chr3 (420-489)||(17550968-17551037)
chr3 (424-489)||(39021277-39021342)
chr3 (372-489)||(14193903-14194022)
chr3 (419-469)||(9584074-9584124)
chr3 (419-472)||(14755283-14755336)
chr3 (272-478)||(23328362-23328565)
chr3 (419-478)||(43012385-43012444)
chr3 (420-466)||(30127273-30127319)
chr3 (420-477)||(31424247-31424304)
chr3 (449-523)||(38488835-38488909)
chr3 (362-489)||(45398749-45398876)
chr3 (423-469)||(2392527-2392573)
chr3 (423-469)||(2394274-2394320)
chr3 (419-489)||(40023573-40023643)
chr3 (418-455)||(20710743-20710780)
chr3 (420-461)||(34475783-34475824)
[»] scaffold1613 (1 HSPs)
scaffold1613 (179-479)||(1028-1324)
[»] chr1 (33 HSPs)
chr1 (179-479)||(38544749-38545045)
chr1 (234-489)||(17033411-17033667)
chr1 (238-550)||(50589148-50589457)
chr1 (272-553)||(19598506-19598779)
chr1 (234-553)||(42373989-42374307)
chr1 (364-682)||(40933818-40934129)
chr1 (243-550)||(16147389-16147698)
chr1 (260-489)||(24658781-24659009)
chr1 (368-553)||(4651739-4651922)
chr1 (366-550)||(27102147-27102331)
chr1 (304-478)||(46814479-46814652)
chr1 (272-461)||(7857517-7857705)
chr1 (388-485)||(6583221-6583318)
chr1 (388-489)||(32864562-32864663)
chr1 (366-470)||(9313309-9313413)
chr1 (372-478)||(27031852-27031958)
chr1 (420-489)||(31585761-31585830)
chr1 (420-489)||(41920463-41920532)
chr1 (420-489)||(46692820-46692889)
chr1 (366-469)||(24449951-24450054)
chr1 (419-489)||(27905422-27905492)
chr1 (432-489)||(5389422-5389479)
chr1 (424-477)||(36132745-36132798)
chr1 (498-550)||(16577349-16577401)
chr1 (366-489)||(30685905-30686028)
chr1 (420-475)||(46603403-46603458)
chr1 (420-478)||(5459172-5459230)
chr1 (439-489)||(10785460-10785510)
chr1 (419-469)||(24684499-24684549)
chr1 (420-464)||(30655571-30655615)
chr1 (420-464)||(33034672-33034716)
chr1 (420-479)||(15840923-15840982)
chr1 (571-680)||(17033740-17033847)
[»] chr4 (35 HSPs)
chr4 (234-676)||(12296000-12296431)
chr4 (234-485)||(46698790-46699040)
chr4 (234-550)||(35800316-35800629)
chr4 (273-550)||(38929698-38929967)
chr4 (297-488)||(53823423-53823614)
chr4 (299-488)||(19672991-19673179)
chr4 (318-489)||(25753081-25753252)
chr4 (227-489)||(16501549-16501811)
chr4 (234-364)||(50102360-50102490)
chr4 (284-553)||(28966749-28967010)
chr4 (366-542)||(22811109-22811283)
chr4 (272-452)||(21987964-21988137)
chr4 (298-479)||(19815235-19815416)
chr4 (244-489)||(31050663-31050907)
chr4 (420-489)||(6599946-6600015)
chr4 (366-489)||(8254984-8255107)
chr4 (366-489)||(8268402-8268525)
chr4 (410-489)||(24740104-24740183)
chr4 (373-479)||(21387215-21387321)
chr4 (419-550)||(2061679-2061809)
chr4 (420-489)||(41117968-41118037)
chr4 (371-478)||(4305687-4305794)
chr4 (419-486)||(49747537-49747604)
chr4 (457-553)||(21983759-21983854)
chr4 (419-480)||(19311353-19311413)
chr4 (420-550)||(38637174-38637302)
chr4 (433-489)||(16833022-16833078)
chr4 (426-478)||(30167576-30167628)
chr4 (418-458)||(53756765-53756805)
chr4 (366-489)||(48098290-48098413)
chr4 (269-455)||(2825645-2825829)
chr4 (423-489)||(39421014-39421080)
chr4 (418-455)||(26500310-26500347)
chr4 (438-487)||(35341341-35341390)
chr4 (424-461)||(46879949-46879986)
[»] chr5 (22 HSPs)
chr5 (185-682)||(17853873-17854374)
chr5 (175-553)||(24072205-24072578)
chr5 (234-550)||(39184126-39184445)
chr5 (234-680)||(8730742-8731177)
chr5 (270-470)||(7392051-7392251)
chr5 (352-488)||(31721620-31721756)
chr5 (176-488)||(39024452-39024763)
chr5 (272-489)||(27712939-27713149)
chr5 (282-550)||(14302371-14302638)
chr5 (419-553)||(22675262-22675395)
chr5 (243-489)||(13954235-13954480)
chr5 (366-489)||(33258883-33259006)
chr5 (368-478)||(7195251-7195360)
chr5 (243-487)||(26045967-26046211)
chr5 (424-550)||(21402778-21402903)
chr5 (371-469)||(34378060-34378158)
chr5 (366-487)||(8297425-8297546)
chr5 (397-489)||(25991995-25992087)
chr5 (366-489)||(23426301-23426424)
chr5 (272-489)||(698223-698441)
chr5 (500-553)||(39024380-39024433)
chr5 (372-455)||(12046217-12046301)
[»] chr8 (24 HSPs)
chr8 (238-553)||(17720644-17720956)
chr8 (175-478)||(18690196-18690501)
chr8 (353-489)||(30236129-30236265)
chr8 (180-486)||(10552043-10552345)
chr8 (282-682)||(15906559-15906949)
chr8 (232-553)||(35062281-35062600)
chr8 (264-485)||(10248558-10248778)
chr8 (366-550)||(17656943-17657125)
chr8 (367-489)||(32945704-32945826)
chr8 (260-469)||(15821400-15821608)
chr8 (426-487)||(41791267-41791328)
chr8 (420-489)||(24995396-24995465)
chr8 (420-488)||(31207364-31207432)
chr8 (366-489)||(9519456-9519579)
chr8 (366-489)||(34389006-34389129)
chr8 (366-489)||(36630794-36630917)
chr8 (387-486)||(12198073-12198172)
chr8 (387-486)||(12442501-12442600)
chr8 (420-458)||(544382-544420)
chr8 (432-478)||(16457473-16457519)
chr8 (420-478)||(37986870-37986928)
chr8 (420-478)||(41893412-41893470)
chr8 (234-295)||(30236292-30236353)
chr8 (420-469)||(32066316-32066365)
[»] scaffold0062 (3 HSPs)
scaffold0062 (175-478)||(46858-47162)
scaffold0062 (175-478)||(59385-59688)
scaffold0062 (175-478)||(71493-71798)
[»] chr7 (39 HSPs)
chr7 (234-533)||(13311663-13311962)
chr7 (282-489)||(11379127-11379335)
chr7 (234-457)||(9106988-9107211)
chr7 (367-554)||(46133213-46133401)
chr7 (234-553)||(38485383-38485698)
chr7 (227-533)||(12480705-12481010)
chr7 (243-489)||(8744987-8745233)
chr7 (418-553)||(48058592-48058726)
chr7 (352-488)||(23983139-23983274)
chr7 (387-550)||(3478330-3478492)
chr7 (243-484)||(42533258-42533499)
chr7 (272-553)||(47456960-47457233)
chr7 (243-489)||(1320629-1320875)
chr7 (243-489)||(16828936-16829183)
chr7 (243-489)||(16954487-16954734)
chr7 (270-488)||(6716738-6716956)
chr7 (372-489)||(9428106-9428223)
chr7 (228-489)||(34389780-34390042)
chr7 (352-551)||(36449027-36449225)
chr7 (366-489)||(24324798-24324922)
chr7 (419-489)||(9349759-9349829)
chr7 (393-489)||(6584893-6584989)
chr7 (424-553)||(22568049-22568178)
chr7 (366-489)||(47325886-47326009)
chr7 (422-487)||(10244195-10244260)
chr7 (420-489)||(38306272-38306341)
chr7 (366-446)||(44755584-44755663)
chr7 (419-478)||(33435119-33435178)
chr7 (500-550)||(23983297-23983347)
chr7 (419-489)||(35745828-35745898)
chr7 (418-461)||(23777664-23777707)
chr7 (571-662)||(31409823-31409914)
chr7 (419-489)||(3419657-3419727)
chr7 (571-661)||(9107313-9107401)
chr7 (721-767)||(28534134-28534179)
chr7 (439-489)||(37795019-37795069)
chr7 (424-489)||(3867131-3867196)
chr7 (420-469)||(5860309-5860358)
chr7 (421-458)||(17802848-17802885)
[»] chr2 (45 HSPs)
chr2 (234-553)||(22885071-22885388)
chr2 (234-489)||(4471749-4472003)
chr2 (175-478)||(15710473-15710776)
chr2 (175-478)||(15722936-15723241)
chr2 (234-533)||(27739802-27740098)
chr2 (244-550)||(10173518-10173826)
chr2 (214-633)||(16952235-16952658)
chr2 (214-633)||(17022900-17023323)
chr2 (214-633)||(17060206-17060629)
chr2 (234-680)||(25504730-25505165)
chr2 (352-489)||(18681008-18681145)
chr2 (369-488)||(1269443-1269562)
chr2 (214-487)||(17078975-17079247)
chr2 (235-485)||(29486957-29487206)
chr2 (371-533)||(15126368-15126529)
chr2 (371-486)||(31902418-31902533)
chr2 (418-678)||(33788455-33788704)
chr2 (370-550)||(16959943-16960122)
chr2 (778-894)||(11588586-11588703)
chr2 (778-894)||(11601171-11601288)
chr2 (238-313)||(40704021-40704096)
chr2 (260-489)||(7874143-7874371)
chr2 (234-310)||(16959852-16959928)
chr2 (366-550)||(13337231-13337414)
chr2 (421-489)||(2062901-2062969)
chr2 (244-485)||(14106529-14106770)
chr2 (420-489)||(39338866-39338935)
chr2 (432-484)||(27880135-27880187)
chr2 (234-401)||(2062738-2062899)
chr2 (417-487)||(915456-915525)
chr2 (271-385)||(3745222-3745336)
chr2 (82-144)||(11588516-11588578)
chr2 (82-144)||(11601101-11601163)
chr2 (419-489)||(14405208-14405278)
chr2 (439-550)||(34230231-34230341)
chr2 (432-485)||(3745357-3745410)
chr2 (243-489)||(37770642-37770888)
chr2 (367-452)||(14566405-14566489)
chr2 (432-489)||(7695986-7696043)
chr2 (372-453)||(41086825-41086905)
chr2 (420-468)||(23650396-23650444)
chr2 (426-489)||(30967143-30967206)
chr2 (596-674)||(20572265-20572341)
chr2 (726-764)||(22884746-22884784)
chr2 (420-461)||(10524108-10524149)
[»] chr6 (19 HSPs)
chr6 (233-487)||(32935342-32935592)
chr6 (245-553)||(9223878-9224185)
chr6 (227-553)||(26534653-26534981)
chr6 (234-485)||(12793940-12794191)
chr6 (352-479)||(33968624-33968751)
chr6 (366-550)||(20701744-20701927)
chr6 (409-489)||(21266113-21266193)
chr6 (419-489)||(26216020-26216090)
chr6 (409-489)||(21264986-21265066)
chr6 (272-553)||(13098509-13098781)
chr6 (243-450)||(3880623-3880830)
chr6 (424-489)||(3117508-3117573)
chr6 (724-769)||(4043344-4043389)
chr6 (432-489)||(13423489-13423546)
chr6 (355-475)||(15943965-15944085)
chr6 (364-468)||(16510323-16510427)
chr6 (420-464)||(34090374-34090418)
chr6 (420-480)||(34092806-34092866)
chr6 (438-479)||(32316397-32316438)
[»] scaffold0200 (1 HSPs)
scaffold0200 (243-489)||(19216-19463)
[»] scaffold0119 (1 HSPs)
scaffold0119 (369-488)||(42140-42259)
[»] scaffold0050 (1 HSPs)
scaffold0050 (282-469)||(36580-36767)
[»] scaffold0063 (1 HSPs)
scaffold0063 (304-485)||(58022-58203)
[»] scaffold0499 (1 HSPs)
scaffold0499 (375-485)||(6525-6634)
[»] scaffold0620 (1 HSPs)
scaffold0620 (420-480)||(8140-8200)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 9e-91; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 177 - 682
Target Start/End: Original strand, 27398726 - 27399224
Alignment:
Q  177 ggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtctt 276  Q
    ||||||||||||||||||||||||| | || ||| |  || |||||||| ||||| |||||||||||||||||||||| | | ||||||| |||||||||    
T  27398726 ggtgtttagggtgctttgagggtgcatgtccttcaagttgagccttttcctttttgatttgattgatgtttgcaccactgcatatcatgttgattgtctt 27398825  T
Q  277 acatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctc 376  Q
    |||||||||||||||||||||||||  || |||| ||||  ||||||||  |||||| |||| ||| | ||||| |||||||||| ||||||||||||||    
T  27398826 acatattgtgtgctggattctggtgcaccagttatttttgcttcgagatcgggagtttgtgtctagctacaatcttgtttggctggctatggtgtttctc 27398925  T
Q  377 tggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaag 476  Q
    | |||||||||| |  | ||||||| |||| |||||||||  |||||||||||  | |||||||| |||||||| || | |||||||| |||||||||||    
T  27398926 tagtggaccaggcgagatgggtgcccttctattttggtccgaaagtctggtggcacaatcgctttagattcgaggtcaggagtcagttatttggttcaag 27399025  T
Q  477 tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttagatcagattcggaggtagatcaact 576  Q
    |||||||||||||       || ||||||| |||||||  |||||||||||||||||   | |||||||||||||||      ||||| || | |||  |    
T  27399026 tttggttttgggctttttttggtgttcttttggtggaccagaggttgagaggtggtggttgctgaatgatctttaga------tcggatgtggctcagtt 27399119  T
Q  577 ttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtcgtttcg 676  Q
    || |||||||||||  | |||||||||||||||| |||||||| ||| ||||||||||  || |||||||||| ||||| | |||||||| |||||| ||    
T  27399120 ttagtgaggaggacttggtgtttcatttagacgggtgttcttttgggctgagtagtggcaatgggtggtttatagatatcg-ttttcagtggtcgttgcg 27399218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 186 - 550
Target Start/End: Complemental strand, 823739 - 823375
Alignment:
Q  186 ggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgt 285  Q
    ||||||||||| |||||| || ||||| ||| |||| ||| ||||| | |||||| ||||||||||||||||||||||||||||||| ||||||  |||     
T  823739 ggtgctttgagtgtgcgtgtccttcgagctgagcctcttcctttttgaattgatttatgtttgcaccaccgtaaatcatgtcgattgccttacaatttgc 823640  T
Q  286 gtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggacc 385  Q
      | ||||||||||||| ||||||| ||||  ||| ||||  |||||| |||| ||| ||||||| |||||||||   ||||||||||||||||||||||    
T  823639 aggttggattctggtggaccggttaattttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggacc 823540  T
Q  386 aggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
      |||||| ||||||| |||   ||||||   |||| ||  |||| ||||| |||||||||||||||||  |||||||| |||  ||||||||| |||||    
T  823539 gtgggtaaagggtgcccttcaaatttggttatgaagactaatgggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttgtttt 823440  T
Q  486 gggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||||       || ||||||||||| |||  ||||||||||||||| | ||| ||||||||||||    
T  823439 gggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttt 823375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 234 - 489
Target Start/End: Complemental strand, 25594775 - 25594521
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||||||||||    ||||||||  |||||||| |||||| |||||||||||| ||| ||| ||||||||  ||||||||  ||| ||    
T  25594775 tttgattgatgtttgcaccaccgcttttcatgtcgtctgtcttacttattgtatgctggattctgatgggccgattactttttcttcgagatcgggactt 25594676  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| | | |   ||| |||| | ||| || || | ||||||||| ||||| |||||| |||||||| |||| |||||||||  ||||||||||||| |    
T  25594675 ggtgtctggctatcatcttgttagactggctttgat-tttctctggcggaccgggggtatggggtgcccttctattttggtcctcaagtctggtgggtag 25594577  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||||| ||||||||||| | |||||||||||||| |||| |||||||    
T  25594576 atcgcttttgattctagatcggaagttaattctttggttcaagattggctttgggc 25594521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 236 - 486
Target Start/End: Complemental strand, 30935644 - 30935394
Alignment:
Q  236 tgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttag 335  Q
    |||||| ||||||| | |||| ||||||||||    ||||||| | ||||||||||||||||| ||| ||||||| ||||  ||||||||| |||||| |    
T  30935644 tgattgttgtttgctcaaccgcaaatcatgtcatccgtcttacttgttgtgtgctggattctgatgggccggtta-ttttgcttcgagattgggagttgg 30935546  T
Q  336 tgtttagatgcaatcatgttt-ggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcga 434  Q
     || |||  ||| |  ||||| || || |||  |||||||||||||||||| ||||||||||||||| ||||| ||||||   ||||| |||||||  ||    
T  30935545 cgtctagcggcattattgttttggttggctacagtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctga 30935446  T
Q  435 tcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttg 486  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||||||||    
T  30935445 tcgcttttgattcaagatcgggagttagttatttggttcaagtttggttttg 30935394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 288 - 533
Target Start/End: Original strand, 5556449 - 5556694
Alignment:
Q  288 gctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccag 387  Q
    ||||||||| ||||| ||||||||||||  ||||||||  | |||| |||| ||| |   ||| |||||| ||| ||| | ||||||||| |||||||      
T  5556449 gctggattcaggtgggccggttacttttgattcgagatcggaagttggtgtctagctaacatcttgtttgtctggctacgatgtttctctcgtggaccga 5556548  T
Q  388 gggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttg 486  Q
    | ||  |||||||| || || |||||||  | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  5556549 gtgtttggggtgcccttttgatttggtcttgtagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttttggttttg 5556648  T
Q  487 ggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    |||       || ||||||||||||||| ||||||| ||||||||||    
T  5556649 ggc-ttttcaggtgttctttcggtggaccggaggtttagaggtggtg 5556694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 403 - 553
Target Start/End: Complemental strand, 1652973 - 1652824
Alignment:
Q  403 ttctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgtt 502  Q
    ||||| |||||||| ||| ||| ||||| ||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||       || |||    
T  1652973 ttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggc-ttttttggtgtt 1652875  T
Q  503 ctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||||||| ||||||| || ||||| | |||||||||||||||||||    
T  1652874 ctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttaga 1652824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 372 - 550
Target Start/End: Original strand, 47945668 - 47945846
Alignment:
Q  372 ttctctggtggaccagggg-taaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttgg 470  Q
    ||||||||||||||||||| |||||||||||  |||| || |||||  ||||| |||||| ||||| |||||||||||||||||| |||||||| |||||    
T  47945668 ttctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttgg 47945767  T
Q  471 ttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
     ||||||||| ||||||||       || ||||||||||||| | |||| ||| ||||||||| ||||| | ||||||||    
T  47945768 ctcaagtttgattttgggc-ttttatggtgttctttcggtggtccggagattgtgaggtggtggaagttaattgatcttt 47945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 550
Target Start/End: Original strand, 25647517 - 25647826
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtc-ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgttta 341  Q
    |||||||||||| ||| ||||||||| ||||| ||   | ||||||| ||| ||| | ||| ||||||||||||  |||||||   |||||  |||| ||    
T  25647517 tgtttgcaccactgtatatcatgtcgtttgtcattcttttttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtcta 25647616  T
Q  342 gatgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctt 440  Q
    | ||||||  |||||||| ||| | |||||||||||||||| ||| || || | ||||||| ||||| ||||||||  |||||||  ||| | ||| |||    
T  25647617 gctgcaattctgtttggcgtga-tttggtgtttctctggtgtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcactt 25647715  T
Q  441 ttgattcgagatcggaagtcagttctttggttcaag--tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagt 538  Q
    ||||||||||||||| |||  ||||||||| | |||  ||||||||| |||       ||  |||||| ||||||  |||||| ||||||||||||||||    
T  25647716 ttgattcgagatcgggagttggttctttggcttaagtttttggttttaggctttttatgg-tttcttttggtggatcggaggtcgagaggtggtgaaagt 25647814  T
Q  539 tgaatgatcttt 550  Q
    ||||||||||||    
T  25647815 tgaatgatcttt 25647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 37123366 - 37123462
Alignment:
Q  393 aggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||| || |||||||||||  || | ||||||| ||||| ||||||||||||||| || |||||||||||||| |||| |||||||||||||    
T  37123366 aggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggc 37123462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 550
Target Start/End: Original strand, 14879421 - 14879576
Alignment:
Q  395 gggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttgggcnnnn 493  Q
    ||||||| ||||| || |||||  |||||||||||| ||||| |||||||||||||||||| |||| |||| |||| ||||| ||||||||||| |        
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttt 14879520  T
Q  494 nnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
       ||  |||||||||||||  |||||| ||||||||||| ||| | ||||||||||    
T  14879521 tatgg-tttctttcggtggataggaggtcgagaggtggtggaagcttaatgatcttt 14879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 19176512 - 19176582
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  19176512 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 19176582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 419 - 485
Target Start/End: Complemental strand, 33144020 - 33143954
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||| || |||||    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttt 33143954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 17550968 - 17551037
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 17551037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Complemental strand, 39021342 - 39021277
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| ||||| ||||||||||||| |||| |||||||||||||| |||||| |||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggc 39021277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 372 - 489
Target Start/End: Original strand, 14193903 - 14194022
Alignment:
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    |||| ||||| ||| || || ||||||||| ||||| ||||||||  |||||||| ||  ||||| ||||||||||||||| || |||| |||||||||     
T  14193903 ttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggc 14194002  T
Q  472 tcaag--tttggttttgggc 489  Q
    |||||  |||||||||||||    
T  14194003 tcaagtttttggttttgggc 14194022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 9584124 - 9584074
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  9584124 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttg 9584074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 14755336 - 14755283
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||    
T  14755336 aagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttggtt 14755283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 272 - 478
Target Start/End: Complemental strand, 23328565 - 23328362
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    |||||||||||||||||||||  || | ||| ||||||  ||||  ||||||||  |||||| |||| ||| ||||||  |||||| ||   ||||||||    
T  23328565 gtcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatggtgt 23328468  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    | |||||||| ||| ||||  ||||||||| |  || |||||| |  |||| ||||||  ||||| |||||||||||||||||| ||| || | |||||     
T  23328467 t-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggc 23328369  T
Q  472 tcaagtt 478  Q
    |||||||    
T  23328368 tcaagtt 23328362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 43012385 - 43012444
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    |||||||||||  ||||| |||||||||||||||||| |||||||||||||  |||||||    
T  43012385 aagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 43012444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 30127273 - 30127319
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttct 466  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||    
T  30127273 agtctggtgagccgatcgcttttgattcgagatcgggagtcagttct 30127319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 31424247 - 31424304
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagt 477  Q
    |||||||| || || ||||||||||||||||||||| ||||||| ||||| |||||||    
T  31424247 agtctggtaggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 38488835 - 38488909
Alignment:
Q  449 agatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttg 523  Q
    ||||||| ||||||| ||||| |||||||||||||||||||       || ||||||||||||||| ||||||||    
T  38488835 agatcgggagtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggttg 38488909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 489
Target Start/End: Original strand, 45398749 - 45398876
Alignment:
Q  362 actatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    |||||||||||||||  ||| ||||| ||  ||||||||| | ||| |||||     |||||||||||  ||||| |||||||||||||||||  |||||    
T  45398749 actatggtgtttctcatgtgcaccagaggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtca 45398848  T
Q  462 gttctttggttcaagtttggttttgggc 489  Q
    | |||||| || ||||| | ||||||||    
T  45398849 gctctttgatttaagttggtttttgggc 45398876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 2392573 - 2392527
Alignment:
Q  423 ctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  2392573 ctggtggaccgatcacttttgattcgagattggaagtcagttctttg 2392527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 2394320 - 2394274
Alignment:
Q  423 ctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  2394320 ctggtggaccgatcacttttgattcgagattggaagtcagttctttg 2394274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 40023643 - 40023573
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||  ||||| |||||||||||||||||| ||||  |||||||| | ||||| | ||||||||    
T  40023643 aagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggc 40023573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Complemental strand, 20710780 - 20710743
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcgg 455  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  20710780 gaagtctggtgggccgatcacttttgattcgagatcgg 20710743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 34475824 - 34475783
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    ||||||||||| ||||| |||||||||||||||||| |||||    
T  34475824 agtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 131; Significance: 2e-67; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 179 - 479
Target Start/End: Complemental strand, 1324 - 1028
Alignment:
Q  179 tgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttac 278  Q
    |||||||||||||||||||||| || || ||||| ||| || ||||   ||  | ||||||||||||||||||||||| ||||||||||| |||||||||    
T  1324 tgtttagggtgctttgagggtgtgtgtccttcgagctgagcatttt---ttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttac 1228  T
Q  279 atattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctg 378  Q
    ||||||||||||||||||| |||| ||| ||||||||  ||||||||| |||||| |||| ||| ||||||| ||||||  ||| | |||||||||||||    
T  1227 atattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctg 1128  T
Q  379 gtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||  ||  | |||||| || ||||| |||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  1127 gtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagtt 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 2e-67; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 179 - 479
Target Start/End: Complemental strand, 38545045 - 38544749
Alignment:
Q  179 tgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttac 278  Q
    |||||||||||||||||||||| || || ||||| ||| || ||||   ||  | ||||||||||||||||||||||| ||||||||||| |||||||||    
T  38545045 tgtttagggtgctttgagggtgtgtgtccttcgagctgagcatttt---ttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttac 38544949  T
Q  279 atattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctg 378  Q
    ||||||||||||||||||| |||| ||| ||||||||  ||||||||| |||||| |||| ||| ||||||| ||||||  ||| | |||||||||||||    
T  38544948 atattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctg 38544849  T
Q  379 gtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||  ||  | |||||| || ||||| |||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  38544848 gtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagtt 38544750  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 234 - 489
Target Start/End: Original strand, 17033411 - 17033667
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||||  ||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||   || ||    
T  17033411 tttgattgatgtttgcaccaccacaaatcttgtcgtttgtcttacttattgtgtgctggattctggtgggccggttacttttgtttcgagatcgagaatt 17033510  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     | || ||| ||||||| |||||||||||||| |||| |||| ||||| |||  | ||| |||||||| ||||| ||||||||   ||||||||||| ||    
T  17033511 ggcgtctagttgcaatcttgtttggctgactacggtgattctatggtgaaccgagagtagggggtgcccttctgatttggtcctatagtctggtgggccg 17033610  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttgggc 489  Q
    ||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  17033611 atcacttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggc 17033667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 238 - 550
Target Start/End: Complemental strand, 50589457 - 50589148
Alignment:
Q  238 attgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtg 337  Q
    ||||||||||||||||||| ||||||||| |  |||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||  ||| || | |    
T  50589457 attgatgtttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcgggacttggcg 50589358  T
Q  338 tttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcg 437  Q
    | ||| |||  || |||||||||| ||| |||  |||||||||||||  |||||||||||||||  |||| || ||||| |||||| ||||||  |||||    
T  50589357 tctagctgctttcttgtttggctggctacggt--ttctctggtggactgggggtaaggggtgcccgtctggttgggtcctgaagtccggtgggctgatcg 50589260  T
Q  438 cttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaag 537  Q
    |||||||||||| ||||| || |||||||||||  |||||||||||||||||        | |||||||||||||||  ||||||| ||||||||  |||    
T  50589259 cttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggcttattta-gtgttctttcggtggaccagaggttgtgaggtggtagaag 50589161  T
Q  538 ttgaatgatcttt 550  Q
    |||| ||||||||    
T  50589160 ttgattgatcttt 50589148  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 272 - 553
Target Start/End: Original strand, 19598506 - 19598779
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||| | |||||||||||| |||||||| ||||||||||||  ||||||||  | |||| | || ||| |||| |  || |||||||||            
T  19598506 gtcttactttttgtgtgctggactctggtgggccggttacttttgcttcgagatcagaagttggcgtctagctgcatttttgcttggctgaca------- 19598598  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    ||||||||||||||  ||||||||||||||  |||| || ||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||||      
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgac 19598698  T
Q  472 tcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    ||||||||| |||||||        || ||||||||||||| | |||||||| ||||||||| ||||||| |||||||||||    
T  19598699 tcaagtttgattttggg-tttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttaga 19598779  T

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Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 234 - 553
Target Start/End: Original strand, 42373989 - 42374307
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||| || ||   | |||||||  ||||| || ||||||||| || |||||||||| ||||||||||||  ||||||||  |||||     
T  42373989 tttgattgatgtttgcatcatcgcttaacatgtcgcctgtct-acttattgtgtgttgtattctggtggaccggttacttttgattcgagatcgggagtc 42374087  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
    ||||| ||| ||||||| |||||||||||| |   ||||||| ||||| |||  ||||  |||||||| ||||| |||||||  |  |||||||||  ||    
T  42374088 agtgtctagttgcaatcttgtttggctgacgacaatgtttctttggtgtaccgagggtttggggtgcccttctgatttggtcatgttgtctggtggaccg 42374187  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggt 532  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| |||||||||||||       |||||||||||||   || |||| ||||||||||||    
T  42374188 atcgcttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggc-ttgtttggcgttctttcggcataccggagattgagaggtggt 42374286  T
Q  533 gaaagttgaatgatctttaga 553  Q
    | ||| ||| |||||||||||    
T  42374287 ggaagctgattgatctttaga 42374307  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 364 - 682
Target Start/End: Original strand, 40933818 - 40934129
Alignment:
Q  364 tatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagt 463  Q
    |||||||||||| ||| ||| | ||||| ||||||| | | |||||||||| |  |||| |||||   ||||||||||||||| ||||||||||||||||    
T  40933818 tatggtgtttctttggcggatcgggggtgaggggtgtcctcctgttttggttcgaaagtttggtgaaccgatcgcttttgatttgagatcggaagtcagt 40933917  T
Q  464 tctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttagatcagattcgg 563  Q
    | |||||||||| |||| |||||  |       || ||| ||||| |||||| |||||||||||||||||  || | ||||||| |||||||  ||  ||    
T  40933918 tatttggttcaattttgattttgaactttttttggtgtt-tttcgatggactagaggttgagaggtggtggtagctaaatgatccttagatcgaatatgg 40934016  T
Q  564 aggtagatcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttc 663  Q
           ||||||||||||||||||||  |||||||||||||||||| |||||||| | | | ||||||||||||  ||||||||||||||| |||||||    
T  40934017 c------tcaactttggtgaggaggacttgatgtttcatttagacgggtgttcttttgaggtaagtagtggtgatgtgtggtttatggatatcgtttttc 40934110  T
Q  664 agttgtcgtttcgtgaagg 682  Q
    | |  || |||||||||||    
T  40934111 aatgatcatttcgtgaagg 40934129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 243 - 550
Target Start/End: Original strand, 16147389 - 16147698
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||| | ||||||||  ||||||||| ||||||||| | | ||| ||||| ||| ||||||||||||||||||  ||||| | ||| |||    
T  16147389 tgtttgcaccaccgcatatcatgtcatttgtcttacttattgtgtgttaggttccggtgggccgattacttttagttcgagatcgggagtcactgtctag 16147488  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     ||||||| |||||||||   | |||||||||||| | | ||| ||||| || ||| || |||||||||||||   |||| ||||||| ||||   ||||    
T  16147489 ctgcaatcttgtttggcttgatttggtgtttctctagcgtaccgggggtgagaggttcccttctgttttggtcgttaagtatggtgggacgatgaatttt 16147588  T
Q  443 gattcgagatcggaagtcagttctttggttcaagtttggttttgggc--nnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttg 540  Q
    ||||| | ||||| |||||||||||||| ||||||||| |||||| |         |   |||||||||| ||  |||||| ||||||||||||||||||    
T  16147589 gattcaatatcgggagtcagttctttgggtcaagtttgattttggacttttttatggtatttctttcggtagatcggaggtggagaggtggtgaaagttg 16147688  T
Q  541 aatgatcttt 550  Q
    ||||||||||    
T  16147689 aatgatcttt 16147698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 260 - 489
Target Start/End: Original strand, 24658781 - 24659009
Alignment:
Q  260 atcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc 359  Q
    |||||||| || ||||||||| |||||||||||| || ||||| ||||||| ||||  ||| ||||  |||||| |||| ||| |||||||||||||| |    
T  24658781 atcatgtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcatgtttgac 24658880  T
Q  360 tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagt 459  Q
    |   ||||||||| |||||||| | | |||| |||||||||| | ||| |||||| |  |||||||||||| | ||| |||||||||||||||||| |||    
T  24658881 ttgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagt 24658979  T
Q  460 cagttctttggttcaagtttggttttgggc 489  Q
    ||| ||||||| | ||||| | ||||||||    
T  24658980 cagctctttggctgaagttggtttttgggc 24659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 368 - 553
Target Start/End: Original strand, 4651739 - 4651922
Alignment:
Q  368 gtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctt 467  Q
    |||||||||||||| ||| ||||||||||||||| |||||  || || | ||||||||| ||| ||||| |||||||||||||||||| |||||| |||     
T  4651739 gtgtttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcag-tctc 4651837  T
Q  468 tggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||| |||||||||||||||       || |||| |||||||||| |||||||| | ||||||| ||| |||||||||||||||    
T  4651838 tggttctagtttggttttgggc-ttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttaga 4651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 366 - 550
Target Start/End: Original strand, 27102147 - 27102331
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaagggg-tgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagtt 464  Q
    |||||||||||||||| |||  |||| ||||| |||| |||||||||||||   ||||||   ||| ||||| |||||||||||||||||| ||||||||    
T  27102147 tggtgtttctctggtgtaccgagggtgagggggtgcccttctgttttggtctcaaagtctaacgggccgatcacttttgattcgagatcgggagtcagtt 27102246  T
Q  465 ctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    |||||| ||||||||||||||||||       ||  |||||||||||||  |||||| ||||||||||| ||| ||||||||||||    
T  27102247 ctttggatcaagtttggttttgggctttttacgg-tttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 304 - 478
Target Start/End: Complemental strand, 46814652 - 46814479
Alignment:
Q  304 ccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccat 403  Q
    ||||||| ||||  ||||||||   ||||| |||| ||| ||||||| |||||| ||   ||||||||| |||||||| ||| |||| |||||||||| |    
T  46814652 ccggttatttttgattcgagatcgagagttggtgtctagttgcaatcctgtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggtgccct 46814554  T
Q  404 tctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
     ||| |||||| |  |||||||||||| ||||| |||||||||||||||||| |||||| | ||||| |||||||    
T  46814553 gctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagtt 46814479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 272 - 461
Target Start/End: Original strand, 7857517 - 7857705
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||||||||||||||||| |||  |||| ||| ||| ||||  ||||||||  |||||| |||| ||| |||||| ||||||| ||   |||| |||    
T  7857517 gtcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaattatgtttgacttgatatgttgt 7857616  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    | |||||||| ||  ||||  ||||||||| | ||| |||||| |  |||||||||||| ||||| |||||||||||||||||| |||||    
T  7857617 t-ctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 388 - 485
Target Start/End: Complemental strand, 6583318 - 6583221
Alignment:
Q  388 gggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||  ||||| |||||||||||||||||| ||||| |||||||| |||  |||||||||    
T  6583318 gggtgaggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttggatcagttttggtttt 6583221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 388 - 489
Target Start/End: Complemental strand, 32864663 - 32864562
Alignment:
Q  388 gggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    |||| ||||||||| ||| | ||||||||  ||| |||||||| | ||| ||||| ||||||||||||||||| ||||||||  ||||||||||||||||    
T  32864663 gggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgg 32864564  T
Q  488 gc 489  Q
    ||    
T  32864563 gc 32864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 9313413 - 9313309
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||||| ||| | | || || ||||||||| ||||| ||||||||  |||||| |||||  |||| |||||||||||||||||| |||||||||    
T  9313413 tggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttc 9313314  T
Q  466 tttgg 470  Q
    |||||    
T  9313313 tttgg 9313309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 372 - 478
Target Start/End: Complemental strand, 27031958 - 27031852
Alignment:
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    |||||||||| ||| |||| |||||||||| | ||| |||||| |  |||||| ||||| ||||| |||||||||||||||||  |||||| |||||||     
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  472 tcaagtt 478  Q
    |||||||    
T  27031858 tcaagtt 27031852  T

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Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 31585830 - 31585761
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  31585830 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 31585761  T

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Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 41920463 - 41920532
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  41920463 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgggc 41920532  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 46692889 - 46692820
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||||| ||||||| | ||||||||    
T  46692889 agtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggc 46692820  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 366 - 469
Target Start/End: Complemental strand, 24450054 - 24449951
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||  ||||||||| | || ||||||| |   ||| ||||||| ||||| ||||||||| ||||||||||||||||||    
T  24450054 tggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttc 24449955  T
Q  466 tttg 469  Q
    ||||    
T  24449954 tttg 24449951  T

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Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 27905422 - 27905492
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||  ||||| |||||||||||||||| ||||| ||||||||| |||| |||| |||||||||    
T  27905422 aagtctggtggaccgatcacttttgattcgagatcagaagttagttctttgattcatgttttgttttgggc 27905492  T

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Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 5389479 - 5389422
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| |||||||||||||||||| |||||||||||||  ||||||||| ||||||||    
T  5389479 cgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggc 5389422  T

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Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 36132798 - 36132745
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagt 477  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||| |||||||    
T  36132798 tggtgggtcgatcgcttttgatttgagatcggaagtcagtttcttgattcaagt 36132745  T

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Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 550
Target Start/End: Original strand, 16577349 - 16577401
Alignment:
Q  498 gcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  16577349 gcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatcttt 16577401  T

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Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 366 - 489
Target Start/End: Complemental strand, 30686028 - 30685905
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||  ||||||||| | ||  |||||| |   ||||| ||||| ||||| ||||||||| |||||||| |||||||||    
T  30686028 tggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttc 30685929  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  30685928 tttgactcaagttggcttttgggc 30685905  T

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Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 46603403 - 46603458
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaa 475  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||||||||||||    
T  46603403 agtctggtgggccattcgcttttgattcgagatcgagagtcagttctttggttcaa 46603458  T

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Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 5459172 - 5459230
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||||||| ||||| |||||||||||||||||| ||||| || |||| ||||||||    
T  5459172 agtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagtt 5459230  T

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Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 10785510 - 10785460
Alignment:
Q  439 ttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||    
T  10785510 ttttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggc 10785460  T

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Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 24684549 - 24684499
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  24684549 aagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttg 24684499  T

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Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 30655571 - 30655615
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagtt 464  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  30655571 agtctagtgggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

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Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 33034716 - 33034672
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagtt 464  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||    
T  33034716 agtctggtgggtcgatcacttctgattcgagatcgaaagtcagtt 33034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 15840982 - 15840923
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 479  Q
    |||||||||||  |||| |||||||||||||||||| ||||||||  ||| |||||||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagttt 15840923  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 680
Target Start/End: Original strand, 17033740 - 17033847
Alignment:
Q  571 tcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtc 670  Q
    ||||||||||||| ||||||  | ||||||||| ||| || |||| ||| ||||| ||||||||||| || ||| ||||| |||  |||||| ||| |||    
T  17033740 tcaactttggtgatgaggacatggtgtttcattcagaggggtgttattttgggattagtagtggtga-tgctgg-ttatgtataccgtttttaagtggtc 17033837  T
Q  671 gtttcgtgaa 680  Q
    ||||||||||    
T  17033838 gtttcgtgaa 17033847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 2e-61; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 234 - 676
Target Start/End: Original strand, 12296000 - 12296431
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||| |||||||||||||||| ||||   ||||  |||||||||||||||||||||||||||||||| ||| ||||||||  ||||||||  ||||||    
T  12296000 tttgatcgatgtttgcaccaccgcaaatttagtcgtctgtcttacatattgtgtgctggattctggtgggccgattacttttgcttcgagatcgggagtt 12296099  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     | || ||| |||| || | |||||||  ||| |||| | |||| ||||||| |||||||||||||||  |||| |||||||| ||||||||||| | ||    
T  12296100 ggcgtctagctgcattcttatttggctagctacggtgatcctctagtggaccgggggtaaggggtgcccctctggtttggtcctgaagtctggtgtgccg 12296199  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    | ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||       || ||||||||||||||| |||||||| | |||||||    
T  12296200 agcgcttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggc-ttttttggtgttctttcggtggaccggaggttgtgtggtggtg 12296298  T
Q  534 aaagttgaatgatctttagatcagattcggaggtagatcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtg 633  Q
     ||| ||  || ||||||||         |  || | ||||||| ||||| |||||| |  ||||||||||||| || |||| ||| |||||||||||||    
T  12296299 gaagctggttgttctttaga---------gtagtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtg 12296389  T
Q  634 gtgattggtggtttatggatattgtttttcagttgtcgtttcg 676  Q
    | ||| ||||| |||||||||| |||||||||| |||| ||||    
T  12296390 gcgatgggtgg-ttatggatatcgtttttcagtggtcgcttcg 12296431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 234 - 485
Target Start/End: Complemental strand, 46699040 - 46698790
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||| | ||||  |||    |||||||||||||||||||||||||||| ||| ||| ||||||||  ||||||||  ||||||    
T  46699040 tttgattgatgtttgcaccactgcaaattttgtattctgtcttacatattgtgtgctggattctg-tgggccgattacttttgcttcgagatcgggagtt 46698942  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| ||| |||| || |||||||    |||  | |||||| |||||||||  ||||  |||||||| ||||| |||||||| | ||||||||||| ||    
T  46698941 ggtgtctagctgcagtcttgtttggtaagctacagagtttctttggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccg 46698842  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    || ||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  46698841 attgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttt 46698790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 234 - 550
Target Start/End: Original strand, 35800316 - 35800629
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||| ||||| |||| |||||| |||||||||||  |||||||| ||||||||| ||||||||| |||  |||||| ||||  ||||||||| |||||     
T  35800316 tttgagtgatgattgctccaccgcaaatcatgtcgtctgtcttacttattgtgtgttggattctgatgggtcggtta-ttttgcttcgagattgggagtg 35800414  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |  |  |    ||||| ||||||| || | |   ||||||||||||||| | |||||||| |||||| ||||| |||||| | |||||||||||   ||    
T  35800415 ggcatccaacgacaatcttgtttggttggcgacaatgtttctctggtggatc-ggggtaagtggtgcccttctgatttggttctgaagtctggtgaaccg 35800513  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||       || ||||||||||||||| |||||||  | |||||||    
T  35800514 atcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggc-ttttttggtgttctttcggtggaccggaggtttcgcggtggtg 35800612  T
Q  534 aaagttgaatgatcttt 550  Q
     ||  ||||||||||||    
T  35800613 gaacctgaatgatcttt 35800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 273 - 550
Target Start/End: Original strand, 38929698 - 38929967
Alignment:
Q  273 tcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtt 372  Q
    |||||| | ||||||||||||||||||||| ||||||||||||  ||||||||  | |||| | |||||| |  | || ||||||| || |        |    
T  38929698 tcttactttttgtgtgctggattctggtgggccggttacttttgcttcgagatcggaagttggcgtttagctctattcttgtttggttggca-------t 38929790  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||||||| |||||||||||||||  |||| || ||||| |||||||| |||| ||||| ||||||||||||||||   |||||||||||||| |    
T  38929791 tctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggct 38929890  T
Q  473 caagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    |||||||| ||||||||       || ||||||||||||  | |||||||| ||||||||| ||||||| ||||||||    
T  38929891 caagtttgattttgggc-ttttatggtgttctttcggtgatccggaggttgtgaggtggtggaagttgattgatcttt 38929967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 297 - 488
Target Start/End: Complemental strand, 53823614 - 53823423
Alignment:
Q  297 tggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggct-gactatggtgtttctctggtggaccaggggtaagg 395  Q
    |||||| ||||||||||||  ||||||||  |||||  |||| ||  ||||||| || |||||| |||| |||||||||||||||| ||| | ||| |||    
T  53823614 tggtgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatcttgcttggcttgact-tggtgtttctctggtgtaccggaggtgagg 53823516  T
Q  396 ggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttggg 488  Q
    |||||| ||||| |||||||   |||||||||||  | ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  53823515 ggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 299 - 488
Target Start/End: Original strand, 19672991 - 19673179
Alignment:
Q  299 gtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggt 398  Q
    |||| ||||||||||||  ||||||||  ||||| ||||| ||| ||||||| |||||||||   |||| | |||||||||| || | ||||| ||||||    
T  19672991 gtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttggcttgatatgatatttctctggttgatcgggggtgaggggt 19673090  T
Q  399 gccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttggg 488  Q
    ||| ||||||||||||||  |||||||||||  |  || ||||| |||||||||| | |||||||||||||| |||||||| ||||||||    
T  19673091 gcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtttagttttggg 19673179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 318 - 489
Target Start/End: Original strand, 25753081 - 25753252
Alignment:
Q  318 ttcgagattcggagttagtgtttagatgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtcc 416  Q
    ||||||||  |||||  |||| ||| ||||||| |||||||| ||| | |||||||||||||||| ||| | ||| ||| |||||  |||  ||||||||    
T  25753081 ttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtga-tgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatttggtcc 25753179  T
Q  417 agaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
      |||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  25753180 taaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggc 25753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 227 - 489
Target Start/End: Original strand, 16501549 - 16501811
Alignment:
Q  227 ttttttatttgattgatgttt--gcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgaga 324  Q
    ||||| |||||||||| ||||  |||| |||| | |||||| |||||||||||| | ||||||  ||||| ||||||| ||| ||| ||||  |||||||    
T  16501549 tttttgatttgattgacgttttggcacaaccgcatatcatgccgattgtcttactttttgtgttttggatgctggtgggccgatta-ttttgcttcgaga 16501647  T
Q  325 ttcggagttagtgtttagatgcaatcatgtttgg-ctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtc 423  Q
    |  |||| | |||| |   ||||||  ||||| | ||| || ||||||||||||||||| || |||||  | |||| | ||| | |||| ||| |||||     
T  16501648 tcgggagctggtgtcttactgcaattttgttttgactggctttggtgtttctctggtggtccgggggt--gtggtggccttccgatttgatcctgaagtt 16501745  T
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  16501746 tggtgggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggc 16501811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 50102360 - 50102490
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||   ||| ||||||||  ||||||||| | ||||    
T  50102360 tttgattgatgtttgcaccaccgtaaattttgtcgtctgtcttacatattgtgtgctggattctggtcaaccgattacttttgcttcgagattggaagtt 50102459  T
Q  334 agtgtttagatgcaatcatgtttggctgact 364  Q
     | || ||| |||| || |||||||||||||    
T  50102460 ggcgtctagttgcattcttgtttggctgact 50102490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 553
Target Start/End: Original strand, 28966749 - 28967010
Alignment:
Q  284 gtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtgga 383  Q
    ||||||||||||||||||| |||||||||||   ||||||||  | |||| | || ||| |||| ||| |||||||||||        |||||  |||||    
T  28966749 gtgtgctggattctggtgggccggttactttggcttcgagatcggaagttggcgtctagctgcattcaggtttggctgaca-------ttctcaagtgga 28966841  T
Q  384 ccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtt 483  Q
    || |||||||| || |||  |||  || ||||| |||||||||| || |||||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  28966842 ccgggggtaagtggcgcccgtctagttgggtcctgaagtctggtagggcgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggtt 28966941  T
Q  484 ttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    ||||||       |  ||||||||||||| | |||||||| ||||||||| ||| ||| |||||| ||||    
T  28966942 ttgggc-ttttaggatgttctttcggtggtccggaggttgtgaggtggtggaagctgattgatctctaga 28967010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 366 - 542
Target Start/End: Complemental strand, 22811283 - 22811109
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||||||||| | | ||||| ||| ||||| ||||| |||||||   |||||||||||| |||||  |||| |||||||||||| |||||||||    
T  22811283 tggtgtttctctggtgtatc-ggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttc 22811185  T
Q  466 tttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaa 542  Q
    ||||| |||||||||||||| |||       ||  |||| ||| |||| ||||||||||||||||||| ||||||||    
T  22811184 tttggctcaagtttggttttaggctttttatgg-tttctctcgatggattggaggttgagaggtggtggaagttgaa 22811109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 272 - 452
Target Start/End: Complemental strand, 21988137 - 21987964
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||| | |||||||||| |||||||||| ||||||||||||  ||||||||  |||||| |||| ||| |||| || |||||||||| |            
T  21988137 gtcttactttttgtgtgctgaattctggtgggccggttacttttgtttcgagatcaggagttggtgtctagctgcattcttgtttggctggca------- 21988045  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagat 452  Q
    |||||||||||||| |||||||||||||||  |||| || ||||| |||||||| ||   |||||||||||||||||||||    
T  21988044 ttctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgatgaaccgatcgcttttgattcgagat 21987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 298 - 479
Target Start/End: Complemental strand, 19815416 - 19815235
Alignment:
Q  298 ggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaagggg 397  Q
    ||||| || |||||||||  ||||||||   ||||  |||| ||| ||||||| |||||||||   ||| || ||| |||||| |||| ||||| |||||    
T  19815416 ggtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatattgtatttttctggttgaccgggggtgagggg 19815317  T
Q  398 tgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 479  Q
    |||| ||||||||||||||  |||||||||||  ||||  ||||| |||||||||| | |||||||||||||| ||||||||    
T  19815316 tgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagttt 19815235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 244 - 489
Target Start/End: Complemental strand, 31050907 - 31050663
Alignment:
Q  244 gtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttaga 343  Q
    |||||||||||||   |||||||||  |||||| | |||| |||| ||| ||| ||||| ||||||||||||  |||||||   |||||  |||  |||     
T  31050907 gtttgcaccaccgcttatcatgtcgtctgtcttgcttattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagc 31050808  T
Q  344 tgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttg 443  Q
    ||||||| |||||| ||   ||||||||| || || || ||| ||||  ||||||||| | ||| |||||| |  |||||||||||| ||||| ||||||    
T  31050807 tgcaatcctgtttgacttgatatggtgtt-ctttgatgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttg 31050709  T
Q  444 attcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||||||| || |||||||||  |||| | ||||||||    
T  31050708 attcgagatcggaagttaggtctttggtttgagttggtttttgggc 31050663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 6600015 - 6599946
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||| |||||||||    
T  6600015 agtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttgttttgggc 6599946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 8254984 - 8255107
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||  ||||||||| | ||  |||||| |  |||||||||||| ||||| |||||||| ||||||| |||||||||||    
T  8254984 tggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttc 8255083  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  8255084 tttgactcaagttggtttttgggc 8255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 8268402 - 8268525
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||  ||||||||| | ||  |||||| |  |||||||||||| ||||| |||||||| ||||||| |||||||||||    
T  8268402 tggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttc 8268501  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  8268502 tttgactcaagttggtttttgggc 8268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 489
Target Start/End: Complemental strand, 24740183 - 24740104
Alignment:
Q  410 ttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| || |||||||||| ||||||||| | |||| ||||||| |||||||| |||||||||| |||||||||||||    
T  24740183 ttggtcccgatgtctggtgggccgatcgcttataattcaagatcgggagtcagttatttggttcaaatttggttttgggc 24740104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 373 - 479
Target Start/End: Complemental strand, 21387321 - 21387215
Alignment:
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||||| | ||||| |||  | || ||||| |||||| | | ||||||||||  ||||| |||||||||||||||||||||||||||||| | ||    
T  21387321 tctctggtggatcgggggtgaggaatacccttctgatttggtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgatt 21387222  T
Q  473 caagttt 479  Q
    |||||||    
T  21387221 caagttt 21387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 550
Target Start/End: Complemental strand, 2061809 - 2061679
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactgga 518  Q
    ||||||||||||  |||| ||||||||||||||| |  |||||||||||||| |||  |||| ||||||||       |   |||||||||||||  |||    
T  2061809 aagtctggtgggctgatcacttttgattcgagattgagagtcagttctttggatcagttttgattttgggcttttgatgat-ttctttcggtggatcgga 2061711  T
Q  519 ggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||| ||||||||||| ||||||||||||||||    
T  2061710 ggtcgagaggtggtggaagttgaatgatcttt 2061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 41118037 - 41117968
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| |||  |||| |||||||||||||||||||||| |||||||||| |||| || ||||||||||    
T  41118037 agtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggc 41117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 478
Target Start/End: Original strand, 4305687 - 4305794
Alignment:
Q  371 tttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttgg 470  Q
    ||||||||||| ||| |||| ||| |||||| | ||  |||||| |   ||||||||||| ||||| |||||||||||||||||| ||| |||||||||     
T  4305687 tttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgt 4305786  T
Q  471 ttcaagtt 478  Q
     |||||||    
T  4305787 ctcaagtt 4305794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 49747537 - 49747604
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttg 486  Q
    |||||||||| | ||||| ||||||||| |||||||  |||||||||||| | |||||||||||||||    
T  49747537 aagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttttgatcaagtttggttttg 49747604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 553
Target Start/End: Complemental strand, 21983854 - 21983759
Alignment:
Q  457 agtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||||||||| |||||||| ||| |||||       || ||||||||||||| | |||||||| ||||||||| ||||||| |||||||||||    
T  21983854 agtcagttctttggctcaagtttagttatgggcttttat-ggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttaga 21983759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 19311413 - 19311353
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttg 480  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||| ||||| ||| |||||    
T  19311413 aagtctggtgggtcgatcacttttgattcgaga-cgggagtcagttatttggatcatgtttg 19311353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 550
Target Start/End: Complemental strand, 38637302 - 38637174
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggag 519  Q
    ||||||| ||| ||||| |||||||||||||||||| ||||| |||||||| | ||| | ||||||||||       ||  |||||| ||||||  ||||    
T  38637302 agtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaag-taggttttgggctttttatgg-tttcttttggtggatcggag 38637205  T
Q  520 gttgagaggtggtgaaagttgaatgatcttt 550  Q
    || ||||||||||| ||| ||||||||||||    
T  38637204 gtcgagaggtggtggaagctgaatgatcttt 38637174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 433 - 489
Target Start/End: Complemental strand, 16833078 - 16833022
Alignment:
Q  433 gatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||| |||||||||||||||||||||||| ||  |||| |||||||||| |||||||    
T  16833078 gatcacttttgattcgagatcggaagtcattttgttggatcaagtttggatttgggc 16833022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 30167628 - 30167576
Alignment:
Q  426 gtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||  |||||||    
T  30167628 gtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagtt 30167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 53756765 - 53756805
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcggaag 458  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  53756765 gaagtctggtgggccgatcacttttgattcgagatcggaag 53756805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 48098290 - 48098413
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    ||||||||||| |||| |||  |||| || |||||| ||||| |||||||   ||| | | |||| | ||| |||||| ||||||||||| ||||||||     
T  48098290 tggtgtttctcaggtgtaccgagggtgagaggtgcccttctgatttggtcataaagcccgatgggcctatcacttttgtttcgagatcgggagtcagttt 48098389  T
Q  466 tttggttcaagtttggttttgggc 489  Q
     |||| | ||||||||||||||||    
T  48098390 gttggattaagtttggttttgggc 48098413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 455
Target Start/End: Original strand, 2825645 - 2825829
Alignment:
Q  269 attgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatgg 368  Q
    |||||||||||||||||||| ||  | | ||||| ||| |||  |||  |||||||||  ||||| |||| ||| |||||||||||||| ||   |||||    
T  2825645 attgtcttacatattgtgtgttgtgtcc-ggtgggccgattatatttgcttcgagattgagagttggtgtctagctgcaatcatgtttgacttgatatgg 2825743  T
Q  369 tgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcgg 455  Q
    |||| |||||||| |||  |||  ||||||||  | ||| |||||| |  ||||| |||||| |||||  |||||||||||||||||    
T  2825744 tgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcgg 2825829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 39421080 - 39421014
Alignment:
Q  423 ctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||| ||||| |||||||||||||||||| ||||| ||| || | |||  |||||||||||||    
T  39421080 ctggtgggccgatcacttttgattcgagatcgggagtcaattccttagatcagttttggttttgggc 39421014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Complemental strand, 26500347 - 26500310
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcgg 455  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  26500347 gaagtcttgtgggtcgatcgcttttgattcgaggtcgg 26500310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 35341390 - 35341341
Alignment:
Q  438 cttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    |||||||| |||||||||||||||| ||||||| ||||||| | ||||||    
T  35341390 cttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 46879949 - 46879986
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  46879949 tggtgggtcgatcccttttgtttcgagatcggaagtca 46879986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 185 - 682
Target Start/End: Complemental strand, 17854374 - 17853873
Alignment:
Q  185 gggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattg 284  Q
    |||||||| ||| |||||| || ||||| ||| ||  |||| ||||| ||||||||||||||||| |||| | || ||||||||||||||||||| ||||    
T  17854374 gggtgcttcgagtgtgcgtgtccttcgagctgagctctttcctttttaatttgattgatgtttgcgccactgcaactcatgtcgattgtcttacaaattg 17854275  T
Q  285 tgtgctggattctggtggtccggttacttttag-ttcgagattcggagttagtgtttagatgcaatcatg-tttggctgactatggtgtttctctggtgg 382  Q
    |||||||||||||||||| ||  |||||||| | || |||||  |||||| || | ||| | ||||| || |||||||| ||| |||||| |||||||||    
T  17854274 tgtgctggattctggtgggccatttactttttgctttgagatcgggagttggtctctagctacaatcttgttttggctggctagggtgttcctctggtgg 17854175  T
Q  383 accaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggt 482  Q
    ||| ||||| ||||||||| ||||  |||||||  ||||| ||||||| ||| ||||||||| |||||||||| ||||| || |||||||||||||        
T  17854174 accgggggtgaggggtgcccttctaatttggtcttgaagtatggtgggccgaccgcttttgactcgagatcgggagtcaattatttggttcaagttctac 17854075  T
Q  483 tttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttag-atcaga---ttcggaggtagatcaacttt 578  Q
    |||||||          |||||||||||||||  || |||||||||||||| |||||||||||||||||| ||  ||   |||||| || | ||| || |    
T  17854074 tttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgacttttcggatgtggctcagctat 17853975  T
Q  579 ggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtcgtttcgtg 678  Q
    ||||| |||||  || ||||||||||||| |  | | |||| ||| |||||||||||||| ||||| |||||||||| ||||||||||  |||||||||     
T  17853974 ggtgatgaggattgg-tgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtgg-ttatggatatcgtttttcagtgatcgtttcgta 17853877  T
Q  679 aagg 682  Q
    ||||    
T  17853876 aagg 17853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 175 - 553
Target Start/End: Complemental strand, 24072578 - 24072205
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||||||||||||| ||||||||| || |||||  || || ||||   ||  ||||||||||||||||  | |||||||||||||||||  ||||    
T  24072578 aaggtgtttagggtgctttaagggtgcgtgtccttcgagttgagcatttt---ttcctatttgattgatgtttttatcaccgtaaatcatgtcgtctgtc 24072482  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttc 374  Q
    |||||| |||||||||||||||| |||| ||||||||||||  ||| ||||  |||||| | |||||| || |||| ||||||| |  |||  |||||||    
T  24072481 ttacatgttgtgtgctggattctagtgggccggttacttttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgtttc 24072382  T
Q  375 tctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttca 474  Q
    |||||||||||  ||||  |||||||| ||||| ||||||||  ||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||    
T  24072381 tctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttggttca 24072282  T
Q  475 agtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    ||||  | ||||||        || ||||||||||||||| ||||||||| |||||||  | | |||||| ||||||||    
T  24072281 agtt--gatttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggttgatgctgaatggtctttaga 24072205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 234 - 550
Target Start/End: Complemental strand, 39184445 - 39184126
Alignment:
Q  234 tttgattgatgttt-gcaccaccgtaaatcatg-tcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggag 331  Q
    |||||||||||||| ||||||||| ||| |||| |||  |||||||  ||||||||||||||||||||||| | ||||||||||  ||||||||  ||||    
T  39184445 tttgattgatgttttgcaccaccgcaaagcatggtcgtctgtcttatttattgtgtgctggattctggtgggcaggttacttttgattcgagatcgggag 39184346  T
Q  332 ttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggt 431  Q
    || | || ||| ||||||| ||||||| || | |  |||||||||||||| |||   |||  |||||||| ||||| |||| ||  |  ||||||||||     
T  39184345 ttggcgtctagttgcaatcttgtttggttggcgacagtgtttctctggtgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggc 39184246  T
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaag--tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggt 529  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||       || |||||||||||||||  ||||||| |||||    
T  39184245 cgatcacttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagc-ttttttggtgttctttcggtggaccagaggttgtgaggt 39184147  T
Q  530 ggtgaaagttgaatgatcttt 550  Q
     ||| ||| ||| ||||||||    
T  39184146 agtggaagctgattgatcttt 39184126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 234 - 680
Target Start/End: Original strand, 8730742 - 8731177
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||| ||||||||||||  || |  |||||||| ||||||||||||||||||||||| ||| ||||||||  ||||||||  | ||||    
T  8730742 tttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattctggtgggccgattacttttgcttcgagatcagaagtt 8730841  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| ||| | | |||   ||| |||| ||| |||||| || ||||||||   || ||||||||||| || || |||||||  | ||||||||||  |     
T  8730842 ggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacct 8730941  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggt 532  Q
    ||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||       || ||||||||| ||||| | ||||| |||||||||    
T  8730942 atcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggc-ttttttggtgttctttcgatggaccgaaggttcagaggtggt 8731040  T
Q  533 gaaagttgaatgatctttagatcagattcggaggtagatcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagt 632  Q
    | ||| | | |||| ||||||  ||   ||      | ||||||||||||| |||||   ||||||||||||||| || |||| ||| ||||||||||||    
T  8731041 ggaagctaattgatatttagaatag---cg------gctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagt 8731131  T
Q  633 ggtgattggtggtttatggatattgtttttcagttgtcgtttcgtgaa 680  Q
    |  | ||  | |||||| ||||  |||||||||| |||||||||||||    
T  8731132 g--gcttttttgtttattgataccgtttttcagtggtcgtttcgtgaa 8731177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 270 - 470
Target Start/End: Complemental strand, 7392251 - 7392051
Alignment:
Q  270 ttgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggt 369  Q
    ||||||||| | ||||||| |||  |||| ||| ||||||||||||  ||||||||  |||||| |||| ||| ||||||| |||||||||   | ||||    
T  7392251 ttgtcttactttttgtgtgttggtatctgatggaccggttacttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggt 7392152  T
Q  370 gtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    ||||||||| || |||  |||| ||||||||| ||||| ||||||||  |||||||||||  ||||| |||||||||||||||||| |||||||||||||    
T  7392151 gtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T
Q  470 g 470  Q
    |    
T  7392051 g 7392051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 352 - 488
Target Start/End: Original strand, 31721620 - 31721756
Alignment:
Q  352 tgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgaga 451  Q
    ||||||| || ||| | ||||||||||||||||| ||||||||||||||| ||||| | |||| | |||||||  |||| ||||||||||||||||||||    
T  31721620 tgtttggttggctacgatgtttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgaga 31721719  T
Q  452 tcggaagtcagttctttggttcaagtttggttttggg 488  Q
    |||| |||||||||| |||||||  ||||||||||||    
T  31721720 tcgggagtcagttctctggttcatttttggttttggg 31721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 176 - 488
Target Start/End: Complemental strand, 39024763 - 39024452
Alignment:
Q  176 aggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcatttttt-atttgattgatgttt--gcaccaccgtaaatcatgtcgattg 272  Q
    |||||||||||||| ||||  ||||||| |||||||| ||| ||  |||| |||||| |||||||||| ||||  ||||||||| ||||| |||||||||    
T  39024763 aggtgtttagggtgttttgtaggtgcgtgtcattcgagctgagcagtttccttttttgatttgattgaagtttttgcaccaccgcaaatcttgtcgattg 39024664  T
Q  273 tcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtt 372  Q
    |||||| | ||||||| ||||| |||||||  || || |||||  |||| |||   ||||| ||||     | ||||| ||||    || || ||| |||    
T  39024663 tcttactttttgtgtgttggatactggtggggcgatt-cttttgtttcgtgatggagagttggtgtccttctacaatcttgttat--tggctttggcgtt 39024567  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||||||   |||| |||| |||| |||||  ||||||| ||||| |||||| || |||||||||||||||||||||| ||||| ||||||||||    
T  39024566 tctctggtggactgagggtgaggg-tgcccttctgagttggtcctgaagtttggtggctcaatcgcttttgattcgagatcgggagtcacttctttggtt 39024468  T
Q  473 caagtttggttttggg 488  Q
    ||||||||||||||||    
T  39024467 caagtttggttttggg 39024452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 272 - 489
Target Start/End: Original strand, 27712939 - 27713149
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||| | ||||||||||||||||| ||| ||||||||||||  |||||| |  |||||| | || |||||||| || ||||||| || |            
T  27712939 gtcttactttttgtgtgctggattctgatgggccggttacttttgcttcgaggtcgggagttggcgtctagatgcattcttgtttggttggca------- 27713031  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    |||||||||||||  ||| |||||| ||||  |||| || ||||| ||||||| ||||| |||||| ||||||||||||||||| | ||||||||||||     
T  27713032 ttctctggtggactggggataagggttgcccgtctggttgggtcctgaagtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggc 27713131  T
Q  472 tcaagtttggttttgggc 489  Q
    ||||||||||||||||||    
T  27713132 tcaagtttggttttgggc 27713149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 282 - 550
Target Start/End: Complemental strand, 14302638 - 14302371
Alignment:
Q  282 ttgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc-tgactatggtgtttctctggt 380  Q
    ||||||||||| |||||| || || |||||||||  ||||||||  |||||  |||| ||| ||||| |  ||||||| ||| | |||||||||||||||    
T  14302638 ttgtgtgctggtttctgggggccccgttacttttgcttcgagatcgggagtccgtgtctagctgcaagctagtttggcgtga-tctggtgtttctctggt 14302540  T
Q  381 ggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttg 480  Q
    | | |  |||| |||| |||| ||||||||||||||  |||||||||||   |||| |||||| |||||||| || ||||||||||||||  ||||||||    
T  14302539 gtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttg 14302440  T
Q  481 gttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    |||||||||       ||  |||||||||||||  |||||| ||||||||||| ||| || |||||||||    
T  14302439 gttttgggctttttatgg-tttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatcttt 14302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 419 - 553
Target Start/End: Complemental strand, 22675395 - 22675262
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactgga 518  Q
    |||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||       || |||||||| |||| | |||    
T  22675395 aagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggc-tttaatggtgttctttcagtggtccgga 22675297  T
Q  519 ggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    ||||| ||||||||| ||||||| |||||||||||    
T  22675296 ggttgtgaggtggtggaagttgattgatctttaga 22675262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 243 - 489
Target Start/End: Complemental strand, 13954480 - 13954235
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||| |||   ||||||||| ||||| ||  | |||| |||||| ||  ||||| ||||||||||||  ||||||||   ||||  |||| |||    
T  13954480 tgtttgcaccgccgcttatcatgtcgtttgtcataatttttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctag 13954381  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     ||||||| | |||| ||   | | |||||||||||||| |||   ||| ||||||||| ||||| ||||||||  |||||||||||| ||||| |||||    
T  13954380 ctgcaatcttatttgacttgattttgtgtttctctggtgtaccgaaggtgaggggtgcc-ttctgatttggtcctaaagtctggtgggccgatcactttt 13954282  T
Q  443 gattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||||| ||||| | |||||| ||||||||||||||||||    
T  13954281 gattcgagatcgggagtcattactttggctcaagtttggttttgggc 13954235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 366 - 489
Target Start/End: Complemental strand, 33259006 - 33258883
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||||||||| |||   ||| ||||||| | |||||||||||| |  |||||||||||| ||||| |||||||||||||||| | ||| |||||    
T  33259006 tggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttc 33258907  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    |||||||| || |||| |||||||    
T  33258906 tttggttcgaggttggatttgggc 33258883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 368 - 478
Target Start/End: Complemental strand, 7195360 - 7195251
Alignment:
Q  368 gtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctt 467  Q
    |||||||||||||| ||||||| | ||||||||| ||||| ||||| |   |||||||||| | ||||| |||||||||||||||||| |||||||||||    
T  7195360 gtgtttctctggtgtaccaggg-tgaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctt 7195262  T
Q  468 tggttcaagtt 478  Q
    ||| |||||||    
T  7195261 tggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 243 - 487
Target Start/End: Complemental strand, 26046211 - 26045967
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||| | ||||||||| ||||| ||| | ||||||||| | ||||||||| | | ||| ||||  |||||||   |||||  |||  |||    
T  26046211 tgtttgcaccaccgcatatcatgtcgtttgtcatactttttgtgtgctagtttctggtgggcagattaattttgcttcgagaccgggagtcggtggctag 26046112  T
Q  343 atgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgt-tttggtccagaagtctggtgggtcgatcgctt 440  Q
     ||||||| | |||||| ||| | |||||||||||||||| ||| ||| ||||||||||| || ||  ||||||||  ||||||||||   ||||| |||    
T  26046111 ctgcaatcttatttggcgtgatt-tggtgtttctctggtgtacc-gggttaaggggtgcctttttgagtttggtcctaaagtctggtgaaccgatcactt 26046014  T
Q  441 ttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    ||||||||||||||| ||| |||  ||||| ||||||||||||||||    
T  26046013 ttgattcgagatcgggagttagtgttttggctcaagtttggttttgg 26045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 424 - 550
Target Start/End: Complemental strand, 21402903 - 21402778
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttg 523  Q
    ||||||| ||||| |||||  ||||||||||| |||||||||||||  ||| ||||||||||| ||       ||  ||||||||||||| |||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactcaggtttggttttgagctttttatggt-ttctttcggtggattggaggttg 21402805  T
Q  524 agaggtggtgaaagttgaatgatcttt 550  Q
    |||||||||| ||||||| ||||||||    
T  21402804 agaggtggtggaagttgattgatcttt 21402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 34378060 - 34378158
Alignment:
Q  371 tttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    ||||||||||| ||| |||| |||| ||||| | ||  |||||| |  |||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  34378060 tttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg 34378158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 487
Target Start/End: Original strand, 8297425 - 8297546
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||||| ||| |||  |||| ||||||||| ||||| |||||| |  |||  |||||||   ||   ||||||||||||||||| |||||||||    
T  8297425 tggtgtttctctagtgtaccgagggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttc 8297524  T
Q  466 tttggttcaagtttggttttgg 487  Q
    ||||| ||||||||||||||||    
T  8297525 tttggctcaagtttggttttgg 8297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 25991995 - 25992087
Alignment:
Q  397 gtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| |||| ||||||| |  |||||||||||| | |||||||||||||||||||||  |||||||||||| | || || ||||||||||||    
T  25991995 gtgcccttctattttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggc 25992087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 23426301 - 23426424
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||| ||||||||  ||| | ||||||  |  |||| |||||||| ||||||||||||  ||| | ||||||||||||||| || |||||||||    
T  23426301 tggtgtttctttggtggactggggtttaggggtaaccgtctggtttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagttc 23426400  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    || |  |||| |||||||||||||    
T  23426401 ttcgaatcaattttggttttgggc 23426424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 489
Target Start/End: Original strand, 698223 - 698441
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcat-gtttggctgactatggtg 370  Q
    ||||||||||||||||||||| || | |||| ||||||  |||   ||||||||  ||||| || || ||| ||||||| | ||||| ||   | ||||     
T  698223 gtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgacttgatttggtt 698322  T
Q  371 tttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttgg 470  Q
    ||||||||||| ||| ||||  ||||||||| | ||  |||||| |   ||||||||||  ||||| |||||||||||||||||| |||||  ||||||     
T  698323 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttga 698422  T
Q  471 ttcaagtttggttttgggc 489  Q
     ||||||| | ||||||||    
T  698423 ctcaagttggtttttgggc 698441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 39024433 - 39024380
Alignment:
Q  500 gttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||||||||| |||| |||||||||||||| || ||||||||||| ||||    
T  39024433 gttctttcggtggattggaagttgagaggtggtggaacttgaatgatctgtaga 39024380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 12046217 - 12046301
Alignment:
Q  372 ttctctggtggaccaggggt-aaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcgg 455  Q
    ||||||||||| ||||| || ||||||||||||  || |||| | | ||||| ||||||| ||||| ||||||||||||||||||    
T  12046217 ttctctggtggtccaggagttaaggggtgccatagtgatttgattcggaagtttggtgggccgatcacttttgattcgagatcgg 12046301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 238 - 553
Target Start/End: Complemental strand, 17720956 - 17720644
Alignment:
Q  238 attgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtg 337  Q
    ||||||||||||||||||| |||  ||||||  | |||||||| ||||||||||||||||||||| ||| ||||||||  || |||||   ||||| | |    
T  17720956 attgatgtttgcaccaccgaaaaatatgtcgtctttcttacattttgtgtgctggattctggtgggccgattacttttgctttgagatcgagagttggcg 17720857  T
Q  338 tttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcg 437  Q
    | ||| |||| || |||||||||| ||   ||||| ||||||||||||||||||||||||||||  |||| ||||||||  |||| |||||||  |||||    
T  17720856 tatagctgcattcttgtttggctggct-ccgtgttcctctggtggaccaggggtaaggggtgcctgtctggtttggtcctaaagtatggtgggctgatcg 17720758  T
Q  438 cttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaag 537  Q
    ||||||||||| |||||| ||||||||||||||||||| || ||||||||||       || |||||||||||||||| ||||||||||||||||| |||    
T  17720757 cttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggc-tgttttggtgttctttcggtggacttgaggttgagaggtggtggaag 17720660  T
Q  538 ttgaatgatctttaga 553  Q
    |||| |||||||||||    
T  17720659 ttgattgatctttaga 17720644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 18690196 - 18690501
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| |||||||||||| |||||| || ||| | ||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||| ||||||    
T  18690196 aaggtgttttgggtgctttgagcgtgcgtgtccttcaaactaagccttttcctttttgatttgattgatgtttgtaccattgcaaatcatgtctattgtc 18690295  T
Q  275 ttacata-ttgtgtgctggattctggtggtccggttacttttagtt-cgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtt 372  Q
    ||||| | |||| |||| ||||||||||| ||  |||||||| ||| ||||||  |||||| |||||||| ||||||| ||||||||||||||| |||||    
T  18690296 ttacaaaattgtctgctagattctggtgggccaattacttttggtttcgagatagggagttggtgtttagttgcaatcttgtttggctgactatagtgtt 18690395  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||| ||| | ||| ||||||||| ||||| || |  ||||| ||||||||   | ||| |||||||||||||||||  | |||||||||| |||    
T  18690396 tctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagtt 18690495  T
Q  473 caagtt 478  Q
    ||||||    
T  18690496 caagtt 18690501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 353 - 489
Target Start/End: Complemental strand, 30236265 - 30236129
Alignment:
Q  353 gtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagat 452  Q
    |||||| || ||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||   ||||||||||||| |||||||||||||||||||||    
T  30236265 gtttggttggctacggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagat 30236166  T
Q  453 cggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||| |||||||||||||||||||||||||||||||||    
T  30236165 cgggagtcagttctttggttcaagtttggttttgggc 30236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 180 - 486
Target Start/End: Original strand, 10552043 - 10552345
Alignment:
Q  180 gtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttaca 279  Q
    |||||||||| |||||||||| || || ||||| ||| || ||||  |||  | |||||||||||||||| |||||| || ||| ||||  ||||||||     
T  10552043 gtttagggtgttttgagggtgtgtgtccttcgagctgcgcttttt--tttcctttttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttact 10552140  T
Q  280 tattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctgg 379  Q
    |||||||||||||||| || ||| ||| | | ||||  ||||||||  |||||| | |  |||   || |  ||||||  ||||||  ||||||||||||    
T  10552141 tattgtgtgctggattttgatgggccgatca-ttttgcttcgagatcgggagttggcgcctagcgacattattgtttgattgactacagtgtttctctgg 10552239  T
Q  380 tggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 479  Q
    | ||||||||| |||||||||| | ||| |||||| | ||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| |||||    
T  10552240 tagaccaggggcaaggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggttctagttt 10552338  T
Q  480 ggttttg 486  Q
    |||||||    
T  10552339 ggttttg 10552345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 282 - 682
Target Start/End: Original strand, 15906559 - 15906949
Alignment:
Q  282 ttgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtg 381  Q
    ||||||| |||||||||| |  ||||| ||||||  ||||||||  |||||| |||| ||  |||  || |||  ||| | |||||||||||||| ||||    
T  15906559 ttgtgtgttggattctggcgagccggtaacttttgtttcgagatcgggagttggtgtctaactgctttcttgtccggcgggctatggtgtttctcgggtg 15906658  T
Q  382 gaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttgg 481  Q
    |||  ||||| | |||||||  | || |||||||| ||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||||    
T  15906659 gactgggggttaagggtgcccgtttggtttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttgg 15906758  T
Q  482 ttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttagatcagattcggaggtagatcaactttggt 581  Q
    ||||||||       |   ||||||| ||||||  |||||| |||||||||| ||| ||| |||| | ||||  ||         ||| ||||||| |||    
T  15906759 ttttgggctgatttagtgtttctttcagtggaccagaggttaagaggtggtggaagatgattgatttatagaatag---------tagctcaacttaggt 15906849  T
Q  582 gaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtcgtttcgtgaag 681  Q
    || |||||| |  ||||| |||||||  | |||| ||| ||||||||||||||  |   |||| ||||||||| ||||||||||| ||||||||||||||    
T  15906850 gatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggcaacatgtgg-ttatggatactgtttttcagtggtcgtttcgtgaag 15906948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 232 - 553
Target Start/End: Original strand, 35062281 - 35062600
Alignment:
Q  232 tatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggag 331  Q
    |||||||||||||||||| |||||| || ||| ||||   ||||||| ||||||||||||||||||| ||  ||  | | ||||  ||||||||  ||||    
T  35062281 tatttgattgatgtttgctccaccgcaagtcacgtcgtccgtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggag 35062379  T
Q  332 ttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggt 431  Q
    || | || |||| ||| |  ||||||| || |||  ||||||| |||   || |  ||||||||||||||  |||| |||||| | |||||||||||||     
T  35062380 ttggcgtctagaggcattattgtttggttggctacagtgtttcactgaaagatcgagggtaaggggtgcctctctgatttggttctgaagtctggtgggc 35062479  T
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtgg 531  Q
    |||||| ||||||||||||||||  |||||||||| | |||| |||||||||||||||       || |||| |||||||||   ||||||| | |||||    
T  35062480 cgatcgattttgattcgagatcgagagtcagttctcttgttctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttgcgcggtgg 35062578  T
Q  532 tgaaagttgaatgatctttaga 553  Q
    || ||| |||||||||||||||    
T  35062579 tggaaggtgaatgatctttaga 35062600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 264 - 485
Target Start/End: Complemental strand, 10248778 - 10248558
Alignment:
Q  264 tgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgac 363  Q
    ||||| ||||||||| | ||||||| ||| ||| ||||| || |||||||||  ||||||||  |||||  |||| ||| ||||||  |||||||||       
T  10248778 tgtcgtttgtcttactt-ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttga 10248680  T
Q  364 tatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagt 463  Q
    | |||||||||||||||| ||| ||||| ||||||| | ||||  ||| ||||  || | ||||||  ||||| |||||||||| ||||||| |||||||    
T  10248679 tttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagt 10248580  T
Q  464 tctttggttcaagtttggtttt 485  Q
    ||||||| ||||||||||||||    
T  10248579 tctttggctcaagtttggtttt 10248558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 17657125 - 17656943
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    ||||||||||||| || ||| ||| | ||||||||| ||||   |||| ||  |||| ||||||||||||| |||||||||||||||||| |||||||||    
T  17657125 tggtgtttctctgatgtacc-gggatgaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttc 17657027  T
Q  466 tttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||||| |||||||||||||||| |       ||  |||||||||||||  |||||| || |||||||| ||| ||||||||||||    
T  17657026 tttggctcaagtttggttttggactttttatgg-tttctttcggtggatcggaggtcgataggtggtggaagctgaatgatcttt 17656943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 367 - 489
Target Start/End: Complemental strand, 32945826 - 32945704
Alignment:
Q  367 ggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttct 466  Q
    ||||||||||| ||||||| | |||||| |||||  ||||| |||| | | ||||| | |||||  |||| |||||||||||||||||| ||||| ||||    
T  32945826 ggtgtttctctcgtggaccggaggtaagaggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtcaattct 32945727  T
Q  467 ttggttcaagtttggttttgggc 489  Q
    ||| |||||||||||||||||||    
T  32945726 ttgattcaagtttggttttgggc 32945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 260 - 469
Target Start/End: Complemental strand, 15821608 - 15821400
Alignment:
Q  260 atcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc 359  Q
    |||||||| || ||||||||||||||||| |||  |||||||| ||| ||| ||||  || |||||  | |||| |||  ||| | ||||| ||||||||    
T  15821608 atcatgtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttctttgagatcggaagttggtgcctagctacaatcctgtttggc 15821509  T
Q  360 tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagt 459  Q
    |   ||||||||| |||||||| |||  |||  ||||||||| | ||| |||||| |  ||||||||||||  |||| |||||||||||||||||| |||    
T  15821508 ttgatatggtgtt-ctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagt 15821410  T
Q  460 cagttctttg 469  Q
    ||| ||||||    
T  15821409 cagctctttg 15821400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 41791328 - 41791267
Alignment:
Q  426 gtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  41791328 gtgggtcgatcgcttttgattcgagatcgagagtcacttctttggttcaagtttagttttgg 41791267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 24995465 - 24995396
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 24995396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 31207432 - 31207364
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttggg 488  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | |||||||    
T  31207432 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 9519456 - 9519579
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||| ||||||||| | ||  |||||| |   ||||| ||||| |||||  ||||||||||||||||| |||||||||    
T  9519456 tggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttc 9519555  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  9519556 tttgactcaagttggtttttgggc 9519579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 366 - 489
Target Start/End: Complemental strand, 34389129 - 34389006
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||||||||  ||||||||| | ||  |||||| |   ||||||||||| ||||| ||||||||||||||||   |||||||||    
T  34389129 tggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttc 34389030  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  34389029 tttgactcaagttggtttttgggc 34389006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 36630794 - 36630917
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||| ||||| ||| ||||  ||||||||| | ||  |||||| |  |||||||||||| ||||| ||||| ||||||||||||  ||||||||    
T  36630794 tggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttc 36630893  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  || |||||| ||||||||    
T  36630894 tttgactctagtttgtttttgggc 36630917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 12198172 - 12198073
Alignment:
Q  387 ggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttg 486  Q
    ||||||||| ||||  ||||  |||||||  ||||||||||||  ||||| ||||| |||  | || || |||||||||||||| |||||||||||||||    
T  12198172 ggggtaaggtgtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttg 12198073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 12442600 - 12442501
Alignment:
Q  387 ggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttg 486  Q
    ||||||||| ||||  ||||  |||||||  ||||||||||||  ||||| ||||| |||  | || || |||||||||||||| |||||||||||||||    
T  12442600 ggggtaaggtgtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttg 12442501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 544420 - 544382
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaag 458  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  544420 agtctggtgggtcgatcactttagattcgagatcggaag 544382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 16457519 - 16457473
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||| |||||||||||||||||| |||||||||||||  |||||||    
T  16457519 cgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 16457473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 37986928 - 37986870
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||||||| | |||  ||||||||||||||||| |||||||||||||  |||||||    
T  37986928 agtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagtt 37986870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 41893470 - 41893412
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    ||||||||||| | | | |||||||||||||||||| |||||||||||||  |||||||    
T  41893470 agtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt 41893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 30236353 - 30236292
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggatt 295  Q
    |||||||||||||||| ||||||  ||||||||||   ||||||| ||||||||| ||||||    
T  30236353 tttgattgatgtttgctccaccgccaatcatgtcgcccgtcttacttattgtgtgttggatt 30236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 32066365 - 32066316
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    ||||||||||| ||||| |||||||||||| ||||| |||||| ||||||    
T  32066365 agtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttg 32066316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 107; Significance: 4e-53; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 46858 - 47162
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| || ||||||||| |||||| |  ||||| ||| |||||||| ||||| |||||||||||||||| ||||  | |||||||||  ||||||    
T  46858 aaggtgttttggatgctttgagcgtgcgtgttcttcgaactgagccttttcctttttgatttgattgatgtttgtaccattgcaaatcatgtt-attgtc 46956  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttaga--tgcaatcatgtttggctgactatggtgtt 372  Q
    ||| | ||||| |||||||||||||||| |||||||||||| |||||||||   ||||| |||| ||||  ||||||| ||||||||||||||| |||||    
T  46957 ttaaaaattgtctgctggattctggtggaccggttacttttggttcgagatagtgagttggtgtctagaattgcaatcttgtttggctgactatagtgtt 47056  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||| ||| ||||| ||||||||| ||||| || |  || || ||||||||   | ||| ||||||||||||||||| || |||||||||| |||    
T  47057 tctctggtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgattcgagatcgtaaatcagttctttagtt 47156  T
Q  473 caagtt 478  Q
    ||||||    
T  47157 caagtt 47162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 59385 - 59688
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| |||||| |||||  ||||| || ||| | ||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||| ||||||    
T  59385 aaggtgttttgggtgccttgagcatgcgtgtccttcaaactaagccttttcctttttgatttgattgatgtttgtaccattgaaaatcatgtctattgtc 59484  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttc 374  Q
    ||||| ||||| |||| ||||||||||| ||  ||||||||  || |||||  |||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  59485 ttacaaattgtctgctagattctggtgggccaattacttttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttc 59584  T
Q  375 tctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttca 474  Q
    ||||||| ||| | ||| ||||||||| ||||| || |  ||||| ||||||||   | ||| |||||||||||||||||  | |||||||||| |||||    
T  59585 tctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagttca 59684  T
Q  475 agtt 478  Q
    ||||    
T  59685 agtt 59688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 71493 - 71798
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| |||||||||||| |||||| || ||| | ||  | |||||| ||||| |||||||||||||||| ||||  | |||||||||| ||||||    
T  71493 aaggtgttttgggtgctttgagcgtgcgtgtccttcaaactaagtcttttcctttttgatttgattgatgtttgtaccattgcaaatcatgtctattgtc 71592  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttaga--tgcaatcatgtttggctgactatggtgtt 372  Q
    ||||| ||||| |||||||||||||||| |||||||||||| |||||||||  |||||| |||| ||||  ||||||| |||||||| |||||| |||||    
T  71593 ttacaaattgtctgctggattctggtggaccggttacttttggttcgagatagggagttggtgtctagaattgcaatcttgtttggcggactatagtgtt 71692  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||| ||| | |||  |||||||| ||||| || |   | || ||||| ||   | ||| |||||||||||||||||  ||| ||||||||| ||    
T  71693 tctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcgagatcgtcagttagttctttgttt 71792  T
Q  473 caagtt 478  Q
    ||||||    
T  71793 caagtt 71798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 9e-51; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 234 - 533
Target Start/End: Original strand, 13311663 - 13311962
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||||||||||   ||||  |||  |||||||||| ||||||||||||||||||||| |||  |||||||  ||||||||  ||||||    
T  13311663 tttgattgatgtttgcaccaccgcttatcagttcgtctgtcttacattttgtgtgctggattctggtgggccgagtacttttccttcgagatcgggagtt 13311762  T
Q  334 agtgtttagatgcaatcatgtttgg-ctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtc 432  Q
     |||| ||  |||| || | ||| | ||||||  | ||||||||||||||||| ||| |||||||||||  |||| |||||||  | ||||||||||| |    
T  13311763 ggtgtctaactgcattcttattttgactgacttcgttgtttctctggtggaccggggataaggggtgcccgtctggtttggtcatgtagtctggtgggcc 13311862  T
Q  433 gatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggt 532  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||| ||||||       |||||||||||| |||||| ||||||||||||||||    
T  13311863 gatcacttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggc-tgttttggcgttctttcgatggactagaggttgagaggtggt 13311961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 282 - 489
Target Start/End: Complemental strand, 11379335 - 11379127
Alignment:
Q  282 ttgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtg 381  Q
    |||||||||||||||| ||||  |||||| ||||  ||| ||||  |||||| |||| ||| | ||||| |||||||||||||| |||||||||||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtg 11379236  T
Q  382 gaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaag-tttg 480  Q
    ||||  ||||  |||||||| ||||  |||||||  | ||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  11379235 gaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagttttg 11379136  T
Q  481 gttttgggc 489  Q
    |||||||||    
T  11379135 gttttgggc 11379127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 234 - 457
Target Start/End: Original strand, 9106988 - 9107211
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||||  |||||||||   |||| ||||||||||||||||||||| |||||| |   | ||||||  ||||||||| | ||||    
T  9106988 tttgattgatgtttgcaccaccacaaatcatgtgatttgtgttacatattgtgtgctggattttggtgggctaatcacttttgcttcgagattggtagtt 9107087  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     | || ||| | ||||| |||||| ||| ||||||||||||| ||||||||||||||| | |||| ||  | |  |||||||  ||||||||||||| ||    
T  9107088 ggagtctagctacaatcttgtttgcctggctatggtgtttctttggtggaccaggggtgatgggttcccgtatcatttggtcatgaagtctggtgggacg 9107187  T
Q  434 atcgcttttgattcgagatcggaa 457  Q
    ||| |||||||||||| |||||||    
T  9107188 atctcttttgattcgacatcggaa 9107211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 367 - 554
Target Start/End: Complemental strand, 46133401 - 46133213
Alignment:
Q  367 ggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttct 466  Q
    ||||||||||||||||||| | ||| ||| ||||| ||||| |||||| | ||||||||||| | ||||||||||||||| |||||||| ||||||||||    
T  46133401 ggtgtttctctggtggaccggaggttaggagtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttct 46133302  T
Q  467 ttggttcaagtttggtttt-gggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttagat 554  Q
     |||||||||||||||||| ||||       || |||| |||||||||| |||||||| | ||||| | ||| ||| ||||||||||||    
T  46133301 ctggttcaagtttggtttttgggctttttttggtgttccttcggtggaccggaggttgcgtggtgggggaagctgattgatctttagat 46133213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 234 - 553
Target Start/End: Original strand, 38485383 - 38485698
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||| |||||| || ||| ||||  |||||||| |||||||||||||||| || ||| ||| | | ||||  |||||| |||||||||    
T  38485383 tttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgtgtgctggattttgatgggccgatca-ttttgcttcgag-ttcggagtt 38485480  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
        | |||  ||| |  ||||||| || |||| |||||||||||||||||  ||||||||||||||| |||||  || || | ||||||||||||| ||    
T  38485481 gacatctagcggcattattgtttggttggctatagtgtttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccg 38485580  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    ||| |||||||||||||||||| |||||| | | |||||| |||||||||||||||       || |||| |||| ||||| ||||||||   |||||||    
T  38485581 atcacttttgattcgagatcgggagtcag-tatctggttctagtttggttttgggc-ttttttggtgttccttcgatggaccggaggttgcacggtggtg 38485678  T
Q  534 aaagttgaatgatctttaga 553  Q
     ||| |||||||||||||||    
T  38485679 gaagctgaatgatctttaga 38485698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 227 - 533
Target Start/End: Original strand, 12480705 - 12481010
Alignment:
Q  227 ttttttatttgattgatgtttg-caccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagat 325  Q
    ||||| |||||||||| ||||| ||| |||| |||||||| || ||||||||| | ||||||| |||||  |||||| ||| ||| ||||  ||||||||    
T  12480705 tttttgatttgattgacgtttggcacaaccgcaaatcatgccgtttgtcttaccttttgtgtgttggatgttggtgggccgatta-ttttgcttcgagat 12480803  T
Q  326 tcggagttagtgtttagatgcaatcatgtttggct-gactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtct 424  Q
      |||| | |||| |   ||||||  ||||| | | | || |||||||||||  ||||||| ||||| |||  || | ||||| ||| |||| ||||| |    
T  12480804 cgggagctggtgtcttactgcaattttgttttgattggctttggtgtttctcacgtggaccgggggtgagg--tggccttctgattttgtcctgaagttt 12480901  T
Q  425 ggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttga 524  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||       || |||||||||||||||||||| |||     
T  12480902 ggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttttaggtgttctttcggtggactggagattgt 12481001  T
Q  525 gaggtggtg 533  Q
    | |||||||    
T  12481002 gcggtggtg 12481010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 243 - 489
Target Start/End: Original strand, 8744987 - 8745233
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||| | ||||||||| ||||| | | | ||||||||||| ||  ||||| ||||||||||||  ||||||||  | ||   |||| |||    
T  8744987 tgtttgcaccaccgcatatcatgtcgtttgtcatgctttttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctag 8745086  T
Q  343 atgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttt 441  Q
     ||||||  |||||||  ||| | |||||||||||||||| |||  |||| ||||||| | ||||| ||||||||  || ||||||||| ||||| ||||    
T  8745087 ctgcaatgttgtttggtgtga-tctggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttt 8745185  T
Q  442 tgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||||| | ||||||| |||| ||||||||||||||||||    
T  8745186 tgattcgagatcgggattcagttcgttggatcaagtttggttttgggc 8745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 48058726 - 48058592
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactgg 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||       |  ||||||||||||| ||||    
T  48058726 gaagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggtttt-ggccttttatgttgttctttcggtggtctgg 48058628  T
Q  518 aggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||| ||||||||| ||| ||| |||||||||||    
T  48058627 aggttgtgaggtggtggaagctgattgatctttaga 48058592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 352 - 488
Target Start/End: Original strand, 23983139 - 23983274
Alignment:
Q  352 tgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgaga 451  Q
    ||||||||||  |||||||||  |||||||||||  |||| ||||||||| ||||  |||||||  |||||||||||||||||||| |||||||||||||    
T  23983139 tgtttggctggttatggtgttcttctggtggaccgagggtgaggggtgcc-ttctaatttggtcttgaagtctggtgggtcgatcgtttttgattcgaga 23983237  T
Q  452 tcggaagtcagttctttggttcaagtttggttttggg 488  Q
    |||| ||||| ||| || | |||||||||||||||||    
T  23983238 tcgggagtcaattccttagctcaagtttggttttggg 23983274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 387 - 550
Target Start/End: Original strand, 3478330 - 3478492
Alignment:
Q  387 ggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttg 486  Q
    ||||| ||||||||| ||||||||||||||  |||| ||||||| ||||| |||||||||||||||||| ||| |||||||||| ||||| || ||||||    
T  3478330 ggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttttg 3478429  T
Q  487 ggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    |||       || ||||||||||||||  |||| | ||||||||| | ||| ||||||||||||    
T  3478430 ggc-tttgttggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatcttt 3478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 243 - 484
Target Start/End: Complemental strand, 42533499 - 42533258
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    ||||||||||||||||  || ||||| ||||| ||| | |||||||||||  || | ||| ||||||||||||  ||||||||  |||||  ||||  ||    
T  42533499 tgtttgcaccaccgtatctcttgtcgtttgtcatactttttgtgtgctggtctccgatgggccggttacttttgcttcgagatcgggagtctgtgtccag 42533400  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     |||| || | ||||||    | |||||||||||||||| | | ||||| ||||||||| | ||| ||||||||  ||||||||||||  |||| |||||    
T  42533399 ctgcattcttatttggcgcgatgtggtgtttctctggtgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcactttt 42533300  T
Q  443 gattcgagatcggaagtcagttctttggttcaagtttggttt 484  Q
    ||||||||||||| ||||| | |||||| | |||||||||||    
T  42533299 gattcgagatcgggagtcaatcctttggcttaagtttggttt 42533258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 272 - 553
Target Start/End: Complemental strand, 47457233 - 47456960
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||| | ||||||||||||||||||||| |||| |||||||  ||||||||  |||||| | || | | |||| || |||||||||  |            
T  47457233 gtcttactttttgtgtgctggattctggtgggccggatacttttgattcgagatcgggagttggcgtctggctgcattcttgtttggctagca------- 47457141  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    |||||||||||| | |||||||||||||||  |||| || ||||| |||||||| |||  ||||||||||||||| ||||| || ||||||||||||||     
T  47457140 ttctctggtggatcgggggtaaggggtgcccgtctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggc 47457041  T
Q  472 tcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||| ||| |||||       || ||||||||||||| | ||| |||| ||||||||| ||| | | |||||||||||    
T  47457040 tcaagtttagttatgggc-ttttatggtgttctttcggtggtccggaagttgtgaggtggtggaagctaattgatctttaga 47456960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 243 - 489
Target Start/End: Original strand, 1320629 - 1320875
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||| | ||||||||| ||| | ||| | || |||| ||| ||| ||||| ||| ||  ||||  ||||||||  |||||| |||| |||    
T  1320629 tgtttgcaccaccgcatatcatgtcggttgccatactttttctgtgttggtttccggtggaccgattt-ttttgcttcgagatcgggagttggtgtctag 1320727  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     || |||  ||||||||  | | ||||||||||||| || | | ||||| ||||||||| || || |||||||   |||||||||||| ||||| |||||    
T  1320728 ctgtaattttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggtcataaagtctggtgggccgatcactttt 1320827  T
Q  443 gattcgagatcggaagtcagttctttggttcaag-tttggttttgggc 489  Q
    ||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  1320828 gattcaaaatcggaagtcagttctttggctcaagttttggttttgggc 1320875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 243 - 489
Target Start/End: Complemental strand, 16829183 - 16828936
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||| | | ||| ||||| |||||  || ||||||||||||| ||| | |||  || ||||||||  ||| |||||  ||||| |||| ||     
T  16829183 tgtttgcaccactgcatatcttgtcgtttgtcaaacttattgtgtgctggtttccgatgggtcgattacttttgcttccagattgagagttggtgtctac 16829084  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     ||||||| || |||||    | |||||||||||| ||| | ||||||| ||||||||| ||||| ||||||||  ||||||||| ||  |||| |||||    
T  16829083 ctgcaatcttggttggcgcgatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcactttt 16828984  T
Q  443 gattcgagatcggaagtcagttctttggttcaag-tttggttttgggc 489  Q
    | |||||||||| ||||||||||||||  ||||| |||||||||||||    
T  16828983 gtttcgagatcgaaagtcagttctttgactcaagttttggttttgggc 16828936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 243 - 489
Target Start/End: Original strand, 16954487 - 16954734
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||| | | ||| ||||| ||||| ||| || |||||||||| ||| | ||| ||| ||||||||  ||| ||||   ||||| |||| |||    
T  16954487 tgtttgcaccactgcatatcttgtcgtttgtcatacttactgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctag 16954586  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
     ||||||| || |||||    | |||| ||||||||||| | ||| ||| ||||||||| ||||| ||||||||  ||||||||| |  ||||| |||||    
T  16954587 ctgcaatcttggttggcgcgatttggtctttctctggtgtatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcactttt 16954686  T
Q  443 gattcgagatcggaagtcagttctttggttcaag-tttggttttgggc 489  Q
    | |||||||||| ||||||||||||||  ||||| |||||||||||||    
T  16954687 gtttcgagatcgaaagtcagttctttgactcaagttttggttttgggc 16954734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 270 - 488
Target Start/End: Complemental strand, 6716956 - 6716738
Alignment:
Q  270 ttgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggt 369  Q
    ||||||||| | ||| ||||||| ||  ||||| || |||||||||| || |||||  |||||  |||| ||| ||||||| | |||||||   | || |    
T  6716956 ttgtcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatcttatttggcttgatttgat 6716857  T
Q  370 gtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||||||||||| |||  | || ||||||||| ||||| |||  ||   ||||||||| || ||||| |||||||||||||||||| |||||||||||||    
T  6716856 gtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttg 6716757  T
Q  470 gttcaagtttggttttggg 488  Q
    | ||||||||||| |||||    
T  6716756 gctcaagtttggtcttggg 6716738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 372 - 489
Target Start/End: Complemental strand, 9428223 - 9428106
Alignment:
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    ||||||||||||| |||||| || ||||||  | || |||||||| | ||||||||| | ||||| |||||||||||||||| ||||||||||||| |||    
T  9428223 ttctctggtggactaggggttagaggtgcctgtttggtttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttcttcggt 9428124  T
Q  472 tcaagtttggttttgggc 489  Q
    || |||||||| ||||||    
T  9428123 tctagtttggtcttgggc 9428106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 228 - 489
Target Start/End: Original strand, 34389780 - 34390042
Alignment:
Q  228 tttttatttgattgatgtttgcaccac-cgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagatt 326  Q
    |||| ||||| ||| |||||||||||  || | |||||||| || ||| |||||||||||||||||  |||| ||| || |||| ||||  ||||||||     
T  34389780 ttttcatttgcttgttgtttgcaccaatcgcatatcatgtctatcgtcgtacatattgtgtgctggtgtctgatgggccagttatttttgcttcgagatc 34389879  T
Q  327 cggagttagtgtttagatgcaatcatgtttgg-ctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctg 425  Q
     | |||| |||| ||| ||||||||||||| | ||   ||||||||| |||||||| ||  ||||| ||| ||||| | ||| ||||||    |||||||    
T  34389880 agaagttggtgtctagttgcaatcatgttttgacttgatatggtgtt-ctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctg 34389978  T
Q  426 gtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| ||||| |||||||||||||||||| |||||| ||||||| | ||||| | ||||||||    
T  34389979 gtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggc 34390042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 352 - 551
Target Start/End: Original strand, 36449027 - 36449225
Alignment:
Q  352 tgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgaga 451  Q
    ||||||||||  || ||||||||||||||||| | ||||| ||||||||| ||||| |||| ||  ||||||| |||||   |||| |||| ||||||||    
T  36449027 tgtttggctggttagggtgtttctctggtggatcgggggtgaggggtgcccttctgatttgatcttgaagtctagtgggcttatcg-tttttattcgaga 36449125  T
Q  452 tcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttta 551  Q
    |  | ||||||||||||||||||||||  ||||||| |       ||  |||||||||||||  |||||||||||||||||| |||   |||||||||||    
T  36449126 ttaggagtcagttctttggttcaagttatgttttggacttattttggttttctttcggtggatcggaggttgagaggtggtggaagcataatgatcttta 36449225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 489
Target Start/End: Complemental strand, 24324922 - 24324798
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||| ||||| ||| ||| | ||||||||| ||||| |||||||   |||| ||||||| |||||  ||||||||||||||||| ||||| |||    
T  24324922 tggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattc 24324823  T
Q  466 tttggttcaag-tttggttttgggc 489  Q
    ||||| ||||| |||||||||||||    
T  24324822 tttggctcaagttttggttttgggc 24324798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 9349759 - 9349829
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||| ||||| |||||||||||||||||| ||||| ||||  |||||||||||| ||||||||    
T  9349759 aagtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggc 9349829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 6584893 - 6584989
Alignment:
Q  393 aggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||| | ||| |||||| |  |||||||||||| ||||| |||||||||||||||||| |||||| ||||||| | ||||| | ||||||||    
T  6584893 aggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggc 6584989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 424 - 553
Target Start/End: Complemental strand, 22568178 - 22568049
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttg 523  Q
    |||| |||| ||||||||||||||| |||||| ||| |||| |||||||||||||| | ||| ||        || |||||||||| |||| | ||||||    
T  22568178 tggtaggtcaatcgcttttgattcgtgatcgggagttagttttttggttcaagttttgattttggattttttaggtgttctttcggcggaccgaaggttg 22568079  T
Q  524 agaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||||||||  ||| |||||||||||    
T  22568078 agaggtggtgaaaactgattgatctttaga 22568049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 366 - 489
Target Start/End: Complemental strand, 47326009 - 47325886
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||  ||||||||| | ||  |||||| |   ||||||||||| ||||||||||||||| |||||||| |||||| ||    
T  47326009 tggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctc 47325910  T
Q  466 tttggttcaagtttggttttgggc 489  Q
    ||||  ||||||| | ||||||||    
T  47325909 tttgactcaagttggtttttgggc 47325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 422 - 487
Target Start/End: Original strand, 10244195 - 10244260
Alignment:
Q  422 tctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||| | ||||||    
T  10244195 tctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 38306272 - 38306341
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| ||||| ||||||||||||||| || |||||||||||||  ||||||| | ||||||||    
T  38306272 agtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagttggtttttgggc 38306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 44755584 - 44755663
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgatt 446  Q
    |||||||||||||||| ||| | ||| ||||||||| ||||| ||||||||  |||||||||||| ||||| |||||||||    
T  44755584 tggtgtttctctggtgtacc-gtggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 33435119 - 33435178
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 478  Q
    |||||||||| | ||||| |||||||||||||||||| |||||||||||||  |||||||    
T  33435119 aagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 23983297 - 23983347
Alignment:
Q  500 gttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    |||||||||||| |  ||||||||||||||||||| |||||||||||||||    
T  23983297 gttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatcttt 23983347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 35745898 - 35745828
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| ||||  |||| ||||||||||||||||||||||||  ||||||| ||||||| | ||||||||    
T  35745898 aagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggc 35745828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 23777707 - 23777664
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||    
T  23777707 gaagtttggttggtcgatcgcttttgcttcgagatcggaagtca 23777664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 662
Target Start/End: Complemental strand, 31409914 - 31409823
Alignment:
Q  571 tcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgttttt 662  Q
    |||| ||||||| ||| || ||| ||||||||||| |||| |||||||| ||| ||||| ||||  || ||| ||||||||||||| |||||    
T  31409914 tcaattttggtgtggatgatcgggtgtttcatttatacgggtgttcttttggggtgagtggtggcaatgggtagtttatggatattattttt 31409823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 3419727 - 3419657
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||| |||||||  |||| |||||||||||||||||| |||||| ||||||  ||||||| | ||||||||    
T  3419727 aagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggc 3419657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 661
Target Start/End: Original strand, 9107313 - 9107401
Alignment:
Q  571 tcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttt 661  Q
    ||||||||||||| |||||  || ||||||||||||| ||  ||| ||| |||||||||||||| ||| ||||| |||||||||| |||||    
T  9107313 tcaactttggtgatgaggatggg-tgtttcatttagaggggagttattttgggatgagtagtggcgatgggtgg-ttatggatatcgtttt 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 767
Target Start/End: Complemental strand, 28534179 - 28534134
Alignment:
Q  721 ctctattcgtcttgagcaaagatttggtttttaaatgaaatttgctg 767  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  28534179 ctctgttcgtcttgagcaaagatttggttttt-aataaaatttgctg 28534134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 37795019 - 37795069
Alignment:
Q  439 ttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  37795019 ttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggc 37795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 3867131 - 3867196
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||  |||| |||||||||||||| ||| |||||||||||||  ||||||| | ||||||||    
T  3867131 tggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggc 3867196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 5860358 - 5860309
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||| |||||| | |||||||||||||||||||||| ||||| |||||||    
T  5860358 agtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttg 5860309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 17802885 - 17802848
Alignment:
Q  421 gtctggtgggtcgatcgcttttgattcgagatcggaag 458  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcggaag 17802848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 9e-51; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 234 - 553
Target Start/End: Complemental strand, 22885388 - 22885071
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||||||| || || |||||||   ||  |||||| ||||||| ||||| ||||||| ||||||||||||  ||||||||  ||||||    
T  22885388 tttgattgatgtttgcaccatcgcaattcatgtcttctgctttacattttgtgtgttggatgctggtgggccggttacttttgcttcgagatcgggagtt 22885289  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| ||| |||   | |||||||| | ||| |||||| ||||||||||   ||||| |||||||||   ||| |||| ||| ||||||||||||| ||    
T  22885288 ggtgtctagctgcttccttgtttggcgggctacggtgttgctctggtggattgggggttaggggtgcccg-ctggtttgatcctgaagtctggtgggccg 22885190  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||        || |||||||||||||||  |||||||||||||||||    
T  22885189 atcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg-ttgttttggtgttctttcggtggaccagaggttgagaggtggtg 22885091  T
Q  534 aaagttgaatgatctttaga 553  Q
     ||||||| |||||| ||||    
T  22885090 gaagttgattgatctataga 22885071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 234 - 489
Target Start/End: Original strand, 4471749 - 4472003
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||||| ||||  |||||   ||||||| ||||||||| ||||||||||||| ||||||||||||  ||| ||||  ||||||    
T  4471749 tttgattgatgtttgcaccaccgcaaattttgtcgtcagtcttacttattgtgtgatggattctggtgggccggttacttttgcttcaagatcgggagtt 4471848  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     | || ||  | |  |  ||||||||||||||  |||||||||||||||||| ||||||||||| |||  |||| |||||||| | ||||||||||| ||    
T  4471849 ggcgtctatctactttattgtttggctgactacagtgtttctctggtggaccgggggtaagggg-gcccgtctggtttggtcctggagtctggtgggccg 4471947  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  4471948 atcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggc 4472003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 15710473 - 15710776
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| |||||| |||||  ||||| || ||| | ||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||| ||||||    
T  15710473 aaggtgttttgggtgccttgagcatgcgtgtccttcaaactaagccttttcctttttgatttgattgatgtttgtaccattgaaaatcatgtctattgtc 15710572  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttc 374  Q
    ||||| ||||| |||| ||||||||||| ||  ||||||||  || |||||  |||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  15710573 ttacaaattgtctgctagattctggtgggccaattacttttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttc 15710672  T
Q  375 tctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttca 474  Q
    ||||||| ||| | ||| ||||||||| ||||| || |  ||||| ||||||||   | ||| |||||||||||||||||  | |||||||||| |||||    
T  15710673 tctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagttca 15710772  T
Q  475 agtt 478  Q
    ||||    
T  15710773 agtt 15710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 175 - 478
Target Start/End: Original strand, 15722936 - 15723241
Alignment:
Q  175 aaggtgtttagggtgctttgagggtgcgtttcattcgacctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtc 274  Q
    ||||||||| |||||||||||| |||||| || ||| | ||  | |||||| ||||| |||||||||||||||| ||||  | |||||||||| ||||||    
T  15722936 aaggtgttttgggtgctttgagcgtgcgtgtccttcaaactaagtcttttcctttttgatttgattgatgtttgtaccattgcaaatcatgtctattgtc 15723035  T
Q  275 ttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttaga--tgcaatcatgtttggctgactatggtgtt 372  Q
    ||||| ||||| |||||||||||||||| |||||||||||| |||||||||  |||||| |||| ||||  ||||||| |||||||| |||||| |||||    
T  15723036 ttacaaattgtctgctggattctggtggaccggttacttttggttcgagatagggagttggtgtctagaattgcaatcttgtttggcggactatagtgtt 15723135  T
Q  373 tctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggtt 472  Q
    ||||||||| ||| | |||  |||||||| ||||| || |   | || ||||| ||   | ||| |||||||||||||||||  ||| ||||||||| ||    
T  15723136 tctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcgagatcgtcagttagttctttgttt 15723235  T
Q  473 caagtt 478  Q
    ||||||    
T  15723236 caagtt 15723241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 234 - 533
Target Start/End: Original strand, 27739802 - 27740098
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    ||||||||||||||||||||| |||| |||||| |  | | || |||||||| ||||||||||||| || ||| ||| |||   ||||||||  ||||||    
T  27739802 tttgattgatgtttgcaccactgtaattcatgttgtctatttt-catattgtatgctggattctggcgggccgattaatttcgcttcgagatcgggagtt 27739900  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
    ||||| ||| |||  ||||||||||| ||||| ||| ||||||||||||||  ||||| |||||||||  ||||  ||||||| ||||||||||||| ||    
T  27739901 agtgtctagctgctttcatgtttggcggactacggt-tttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccg 27739999  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
    |||||||||||||| ||||||  |||||||  || |||||||||||||| |||||        || |||||||||||||||  |||||||||||||||||    
T  27740000 atcgcttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttggg-ttgttttggtgttctttcggtggaccagaggttgagaggtggtg 27740098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 244 - 550
Target Start/End: Complemental strand, 10173826 - 10173518
Alignment:
Q  244 gtttgcaccaccgtaaatcatgtcgatt-gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    ||||||||||||| | ||||||||| || ||||||  ||||||||  ||| ||| ||||  | ||||||||||  |||| |||  | |||  |||| |||    
T  10173826 gtttgcaccaccgcatatcatgtcgttttgtcttatttattgtgtattggtttccggtgtgctggttacttttgtttcgggatcggaagtcggtgtctag 10173727  T
Q  343 atgcaatcatgtttggct-gactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttt 441  Q
     ||||||| ||||||||| ||  | ||||||||||||||| ||||| ||| | ||||||  || |||||||||||  |||||| ||||| ||||| ||||    
T  10173726 ctgcaatcttgtttggcttgataacggtgtttctctggtgtaccagaggtgaagggtgctcttttgttttggtcctaaagtctagtgggccgatcacttt 10173627  T
Q  442 tgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttga 541  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||||       || |||||||||||| |  |||||| ||||||||||| |||||||    
T  10173626 tgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttga 10173527  T
Q  542 atgatcttt 550  Q
    |||||||||    
T  10173526 atgatcttt 10173518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 214 - 633
Target Start/End: Complemental strand, 16952658 - 16952235
Alignment:
Q  214 ctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttactt 313  Q
    |||||||||||| ||||| ||||| ||| ||||| | |||| | | ||||||||  ||||||||||||||||||||||| ||  | ||| | ||||||||    
T  16952658 ctgtgccttttcctttttgatttgtttgttgttttctccactgcatatcatgtcatttgtcttacatattgtgtgctggttttcgatggactggttactt 16952559  T
Q  314 ttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttgg 413  Q
    ||| ||||||||   ||||| |||| ||| ||||||| |||| || |   ||| |||||||||| ||||||| ||||| |||||| || |||||  |||     
T  16952558 ttacttcgagatcgagagtttgtgtgtagttgcaatcttgttgggtttgatatcgtgtttctctagtggacc-ggggttaggggttcccttctgaattgt 16952460  T
Q  414 tccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtgga 513  Q
    |||  ||| ||| |  | |||||  ||||||||||||||||| || ||||||||||| |||||||||||||||| |       || ||||||||||||||    
T  16952459 tcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtgga 16952360  T
Q  514 ctggaggttgagaggtggtgaaagttgaatgatcttt-agatcaga----ttcggaggtagatcaactttggtgaggaggaccggatgtttcatttagac 608  Q
      |||||||||||||||||| ||| | || |||||||  |||  ||    |||||| || ||||||||||||||  |||||| ||  ||||||||||||     
T  16952359 tcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagag 16952260  T
Q  609 ggatgttctttcgggatgagtagtg 633  Q
    || |||||||| ||| |||||||||    
T  16952259 gggtgttctttgggggtgagtagtg 16952235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 214 - 633
Target Start/End: Complemental strand, 17023323 - 17022900
Alignment:
Q  214 ctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttactt 313  Q
    |||||||||||| ||||| ||||| ||| ||||| | |||| | | ||||||||  ||||||||||||||||||||||| ||  | ||| | ||||||||    
T  17023323 ctgtgccttttcctttttgatttgtttgttgttttctccactgcatatcatgtcatttgtcttacatattgtgtgctggttttcgatggactggttactt 17023224  T
Q  314 ttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttgg 413  Q
    ||| ||||||||   ||||| |||| ||| ||||||| |||| || |   ||| |||||||||| ||||||| ||||| |||||| || |||||  |||     
T  17023223 ttacttcgagatcgagagtttgtgtgtagttgcaatcttgttgggtttgatatcgtgtttctctagtggacc-ggggttaggggttcccttctgaattgt 17023125  T
Q  414 tccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtgga 513  Q
    |||  ||| ||| |  | |||||  ||||||||||||||||| || ||||||||||| |||||||||||||||| |       || ||||||||||||||    
T  17023124 tcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtgga 17023025  T
Q  514 ctggaggttgagaggtggtgaaagttgaatgatcttt-agatcaga----ttcggaggtagatcaactttggtgaggaggaccggatgtttcatttagac 608  Q
      |||||||||||||||||| ||| | || |||||||  |||  ||    |||||| || ||||||||||||||  |||||| ||  ||||||||||||     
T  17023024 tcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagag 17022925  T
Q  609 ggatgttctttcgggatgagtagtg 633  Q
    || |||||||| ||| |||||||||    
T  17022924 gggtgttctttgggggtgagtagtg 17022900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 214 - 633
Target Start/End: Complemental strand, 17060629 - 17060206
Alignment:
Q  214 ctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttactt 313  Q
    |||||||||||| ||||| ||||| ||| ||||| | |||| | | ||||||||  ||||||||||||||||||||||| ||  | ||| | ||||||||    
T  17060629 ctgtgccttttcctttttgatttgtttgttgttttctccactgcatatcatgtcatttgtcttacatattgtgtgctggttttcgatggactggttactt 17060530  T
Q  314 ttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttgg 413  Q
    ||| ||||||||   ||||| |||| ||| ||||||| |||| || |   ||| |||||||||| ||||||| ||||| |||||| || |||||  |||     
T  17060529 ttacttcgagatcgagagtttgtgtgtagttgcaatcttgttgggtttgatatcgtgtttctctagtggacc-ggggttaggggttcccttctgaattgt 17060431  T
Q  414 tccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtgga 513  Q
    |||  ||| ||| |  | |||||  ||||||||||||||||| || ||||||||||| |||||||||||||||| |       || ||||||||||||||    
T  17060430 tcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtgga 17060331  T
Q  514 ctggaggttgagaggtggtgaaagttgaatgatcttt-agatcaga----ttcggaggtagatcaactttggtgaggaggaccggatgtttcatttagac 608  Q
      |||||||||||||||||| ||| | || |||||||  |||  ||    |||||| || ||||||||||||||  |||||| ||  ||||||||||||     
T  17060330 tcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagag 17060231  T
Q  609 ggatgttctttcgggatgagtagtg 633  Q
    || |||||||| ||| |||||||||    
T  17060230 gggtgttctttgggggtgagtagtg 17060206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 234 - 680
Target Start/End: Complemental strand, 25505165 - 25504730
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||| ||||||||||||  || |  |||||||| ||||||||||||||||||||||| ||| ||||||||  ||||||||  | ||||    
T  25505165 tttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattctggtgggccgattacttttgcttcgagatcagaagtt 25505066  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| ||| | | |||   ||| |||| ||| |||||| || ||||||||   || ||||||||||| || || |||||||  | ||||||||||  |     
T  25505065 ggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacct 25504966  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaag-tttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggt 532  Q
    ||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||       || ||||||||| ||||| | ||||| |||||||||    
T  25504965 atcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggc-ttttttggtgttctttcgatggaccgaaggttcagaggtggt 25504867  T
Q  533 gaaagttgaatgatctttagatcagattcggaggtagatcaactttggtgaggaggaccggatgtttcatttagacggatgttctttcgggatgagtagt 632  Q
    | ||| | | |||| ||||||  ||   ||      | ||||||||||||| |||||   ||||||||||||||| || |||| ||| ||||||||||||    
T  25504866 ggaagctaattgatatttagaatag---cg------gctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagt 25504776  T
Q  633 ggtgattggtggtttatggatattgtttttcagttgtcgtttcgtgaa 680  Q
    |  | ||  | |||||| ||||  |||||||||| |||||||||||||    
T  25504775 g--gcttttttgtttattgataccgtttttcagtggtcgtttcgtgaa 25504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 352 - 489
Target Start/End: Original strand, 18681008 - 18681145
Alignment:
Q  352 tgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgaga 451  Q
    ||||||| |||||| ||||||||||| ||||||| |||||||||  |||| ||||| ||||||   ||||| ||||||| |||| || ||||||||||||    
T  18681008 tgtttggttgactacggtgtttctctagtggaccgggggtaaggactgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgaga 18681107  T
Q  452 tcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18681108 tcgggagtcagttctctggttcaagtttggttttgggc 18681145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 369 - 488
Target Start/End: Original strand, 1269443 - 1269562
Alignment:
Q  369 tgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttcttt 468  Q
    ||||||||||||  ||||  ||| ||||||||| ||||| ||| ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  1269443 tgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttcttt 1269542  T
Q  469 ggttcaagtttggttttggg 488  Q
    || |||||||||||||||||    
T  1269543 ggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 214 - 487
Target Start/End: Original strand, 17078975 - 17079247
Alignment:
Q  214 ctgtgccttttcattttttatttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttactt 313  Q
    |||||||||||| ||||| ||||| ||| ||||| | |||| | | ||||||||  ||||||||||||||||||||||| ||  | ||| | ||||||||    
T  17078975 ctgtgccttttcctttttgatttgtttgttgttttctccactgcatatcatgtcatttgtcttacatattgtgtgctggttttcgatggactggttactt 17079074  T
Q  314 ttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttgg 413  Q
    ||| ||||||||   ||||| |||| ||| ||||||| |||| || |   ||| |||||||||| ||||||| ||||| |||||| || |||||  |||     
T  17079075 ttacttcgagatcgagagtttgtgtgtagttgcaatcttgttgggtttgatatcgtgtttctctagtggacc-ggggttaggggttcccttctgaattgt 17079173  T
Q  414 tccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    |||  ||| ||| |  | |||||  ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  17079174 tcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17079247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 485
Target Start/End: Original strand, 29486957 - 29487206
Alignment:
Q  235 ttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggt-ccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||||||||| || |||||| |  ||| |||| | |||||||||||||||||  ||  ||||||||||||  ||||||||  ||||||    
T  29486957 ttgattgatgtttgcaccaccgcaattcatgttgtctgttttacttgttgtgtgctggattctgacggggccggttacttttgcttcgagatcgggagtt 29487056  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     |||| ||| |||  || ||| |||| | ||  ||||||||||||||||||  ||||| |||||||||  |||| |||| ||  ||||||||||||  |     
T  29487057 ggtgtctagctgctttcttgtctggcgggctc-ggtgtttctctggtggactgggggttaggggtgcccgtctggtttgatcttgaagtctggtggc-ca 29487154  T
Q  434 atcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    ||||||||||||||||||| |  ||||||||||| |||||| ||||||||||    
T  29487155 atcgcttttgattcgagattgatagtcagttcttcggttcatgtttggtttt 29487206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 371 - 533
Target Start/End: Complemental strand, 15126529 - 15126368
Alignment:
Q  371 tttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttgg 470  Q
    ||||||||||||||| |||||||||||| ||  |||  || ||||| ||||||||||||| |||||  ||||||||||||||||| |||| |||||||||    
T  15126529 tttctctggtggaccgggggtaaggggttcccgtctcgttgggtcctgaagtctggtgggccgatcatttttgattcgagatcgggagtcggttctttgg 15126430  T
Q  471 ttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtg 533  Q
     ||| ||||||||||||||       || ||||||||||||| | |||||||| |||||||||    
T  15126429 ctcatgtttggttttgggc-ttttatggtgttctttcggtggtccggaggttgtgaggtggtg 15126368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 371 - 486
Target Start/End: Complemental strand, 31902533 - 31902418
Alignment:
Q  371 tttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttgg 470  Q
    ||||||||||||||| ||||| ||||||| | ||||  |||| | | ||||||||||||| | ||||||||| |||||||||||| |||||||||| |||    
T  31902533 tttctctggtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctgg 31902434  T
Q  471 ttcaagtttggttttg 486  Q
    ||||||||||||||||    
T  31902433 ttcaagtttggttttg 31902418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 418 - 678
Target Start/End: Complemental strand, 33788704 - 33788455
Alignment:
Q  418 gaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactgg 517  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||        || |||||||||||| ||  |    
T  33788704 gaagtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggtttggctttggg-ttgttttggtgttctttcggtgaaccag 33788606  T
Q  518 aggttgagaggtggtgaaagttgaatgatctttagatcagattcggaggtagatcaactttggtgaggaggaccggatgtttcatttagacggatgttct 617  Q
    |||||||||||||||| ||| ||| |||||| ||||| |         || | ||| ||| ||||| |||||| || ||||||||||||| || |||| |    
T  33788605 aggttgagaggtggtggaagctgattgatctatagatta---------gtggctcagcttaggtgatgaggacggggtgtttcatttagaggggtgttat 33788515  T
Q  618 ttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtcgtttcgtg 678  Q
    || |||| ||||||||| ||  ||||| |||||||| |||||| ||||| || ||||||||    
T  33788514 tttgggacgagtagtggcgacaggtgg-ttatggattttgtttgtcagtggttgtttcgtg 33788455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 550
Target Start/End: Original strand, 16959943 - 16960122
Alignment:
Q  370 gtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    |||||||| |||||   |||||||||||||||  | || |  |||||  |||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  16959943 gtttctcttgtggattgggggtaaggggtgcccgtttggtagggtcctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttg 16960042  T
Q  470 gttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    | ||||||||||||||||||       || |||||||||||||||  ||||||| ||| ||||| ||||||| || |||||    
T  16960043 gctcaagtttggttttgggc-ttatttggtgttctttcggtggaccagaggttgtgagctggtggaagttgattgttcttt 16960122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 778 - 894
Target Start/End: Original strand, 11588586 - 11588703
Alignment:
Q  778 gtatggttatacatttgtttttgaatttcttaatcattttacccnnnnnnn-tctattcctgaggatgagtttcttgaagggattgaaacatgcaaacac 876  Q
    ||||||||||||||||||||||| ||||||| || |||||| ||        |||||||| |||||||||| ||||| |||||||||||||||||||| |    
T  11588586 gtatggttatacatttgtttttggatttcttgataattttaaccaaaaaaaatctattcccgaggatgagtatcttgcagggattgaaacatgcaaaccc 11588685  T
Q  877 aatctcaattattattca 894  Q
    ||||||||||||||||||    
T  11588686 aatctcaattattattca 11588703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 778 - 894
Target Start/End: Original strand, 11601171 - 11601288
Alignment:
Q  778 gtatggttatacatttgtttttgaatttcttaatcattttacccnnnnnnn-tctattcctgaggatgagtttcttgaagggattgaaacatgcaaacac 876  Q
    ||||||||||||||||||||||| ||||||| || |||||| ||        |||||||| |||||||||| ||||| |||||||||||||||||||| |    
T  11601171 gtatggttatacatttgtttttggatttcttgataattttaaccaaaaaaaatctattcccgaggatgagtatcttgcagggattgaaacatgcaaaccc 11601270  T
Q  877 aatctcaattattattca 894  Q
    ||||||||||||||||||    
T  11601271 aatctcaattattattca 11601288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 40704021 - 40704096
Alignment:
Q  238 attgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttactt 313  Q
    ||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  40704021 attgaggtttgcaccaccgcaaatcatgtcgtttgtcatacatattgtgtgctggattctggtgggccggttactt 40704096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 260 - 489
Target Start/End: Original strand, 7874143 - 7874371
Alignment:
Q  260 atcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc 359  Q
    |||||||| || |||||| ||||||||||||||  || ||||| ||||||  ||||  ||||||||  |||||| |||| ||| ||||||| || ||| |    
T  7874143 atcatgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcctgcttgac 7874242  T
Q  360 tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagt 459  Q
    |   ||||||||| |||| ||| |||  |||  | ||||||| | ||| |||||| |  |||||||||||||||||| |||||||||||||||||| |||    
T  7874243 ttgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagt 7874341  T
Q  460 cagttctttggttcaagtttggttttgggc 489  Q
    ||| ||||||  ||||||| | ||||||||    
T  7874342 cagctctttgactcaagttggtttttgggc 7874371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 16959852 - 16959928
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggtta 310  Q
    |||||||||| |||||||||||| ||||||||| |  |||||||||||||||||||||||||||||||| |||||||    
T  16959852 tttgattgatatttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctggtgggccggtta 16959928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 366 - 550
Target Start/End: Original strand, 13337231 - 13337414
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||||||||||||||| |||||||  | |||||||| ||||| ||||  |   ||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  13337231 tggtgtttctctggtgtaccagggtgagggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttc 13337330  T
Q  466 tttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||||  ||||||| |||||||| |       ||  |||||||||||||  |||||| |||||||||||||   ||||||||||||    
T  13337331 tttgactcaagttaggttttggactttttatgg-tttctttcggtggataggaggtcgagaggtggtgaacactgaatgatcttt 13337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 2062901 - 2062969
Alignment:
Q  421 gtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||| |||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 2062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 244 - 485
Target Start/End: Complemental strand, 14106770 - 14106529
Alignment:
Q  244 gtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttaga 343  Q
    |||||||||||||   |||||||||  |||||| | ||||||||| ||| ||| ||||| ||||||||||||  |||||||   |||||  |||  |||     
T  14106770 gtttgcaccaccgcttatcatgtcgtctgtcttgcttattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagc 14106671  T
Q  344 tgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttg 443  Q
    ||||||| |||||| ||   | ||||||| ||||  || |||  |||  ||||||||| | ||| ||||||||  |||||||||||| ||||| ||||||    
T  14106670 tgcaatcctgtttgacttgatttggtgttcctctcatgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttg 14106571  T
Q  444 attcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    |||| ||||||| |||||| ||||| | |||  |||||||||    
T  14106570 attcaagatcgggagtcagctctttagatcagttttggtttt 14106529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 39338935 - 39338866
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||||| | ||||||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 39338866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 27880187 - 27880135
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttt 484  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  27880187 cgatcgattttgattcgagatcggaagtcagttatttggttcaagtttggttt 27880135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 401
Target Start/End: Original strand, 2062738 - 2062899
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||||||||||  |||| |||||||||||  |     ||||| |||||||||||| ||||||| ||  ||||||||  ||||||||  ||||||    
T  2062738 tttgattgatgtttgcattaccgcaaatcatgtcgtat-----acatagtgtgtgctggatgctggtgggccaattacttttgcttcgagatcgggagtt 2062832  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgcc 401  Q
     |||| ||| |||| || |||||||||| ||| | |  |||||||||||||| |||||||||||||||    
T  2062833 ggtgtctagctgcattcttgtttggctggctacgatcattctctggtggacc-ggggtaaggggtgcc 2062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 915525 - 915456
Alignment:
Q  417 agaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    |||||| |||||||  |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  915525 agaagtatggtgggctgatcgcttttgattcgagatcgaaagtcagtt-tttgattcaagtttggttttgg 915456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 271 - 385
Target Start/End: Original strand, 3745222 - 3745336
Alignment:
Q  271 tgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtg 370  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||| || |||||  |||||| | || ||| |||| ||  ||||||| | ||| | ||    
T  3745222 tgtcgtacttattgtgtgctggattctggtgggccggttacttttactttgagatcgggagttggcgtctagctgcagtctcgtttggcaggctacgctg 3745321  T
Q  371 tttctctggtggacc 385  Q
    |||||||||||||||    
T  3745322 tttctctggtggacc 3745336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 11588516 - 11588578
Alignment:
Q  82 atgagattaattgaataaggaatgtccaattttaaagtgactggtacaatatgttgatttgga 144  Q
    |||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||| ||||    
T  11588516 atgagattaattgaataaggaatgtccaatttcaaattgactagcacaatatgttgatatgga 11588578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 11601101 - 11601163
Alignment:
Q  82 atgagattaattgaataaggaatgtccaattttaaagtgactggtacaatatgttgatttgga 144  Q
    |||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||| ||||    
T  11601101 atgagattaattgaataaggaatgtccaatttcaaattgactagcacaatatgttgatatgga 11601163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 14405208 - 14405278
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||| ||||| |||||||||||||||||| |||||| ||||||| ||||||| | ||||||||    
T  14405208 aagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggc 14405278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 439 - 550
Target Start/End: Original strand, 34230231 - 34230341
Alignment:
Q  439 ttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagt 538  Q
    |||| |||||||||| | |||||||||||||| ||||||||| ||||||||       ||  |||||||||||||  |||||||||||||||||| |||     
T  34230231 tttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggt-ttctttcggtggatcggaggttgagaggtggtggaagc 34230329  T
Q  539 tgaatgatcttt 550  Q
    ||||||||||||    
T  34230330 tgaatgatcttt 34230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 485
Target Start/End: Original strand, 3745357 - 3745410
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  3745357 cgatcgcttttaattcgagatcggaagtcagttctttggtttaagttttgtttt 3745410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 489
Target Start/End: Complemental strand, 37770888 - 37770642
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||||| ||| ||||| ||||| | | | |||| |||||| |   ||||| ||||||||||||  ||||||||  |||||| |||| |||    
T  37770888 tgtttgcaccaccgtatatcttgtcgtttgtcatgctttttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgtctag 37770789  T
Q  343 atgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgctttt 442  Q
      |||||    ||||||    | | |||||||||||||| |||  |||| |||||||||  |||| ||||||||  | || ||||||| ||||| |||||    
T  37770788 cagcaattcgatttggcgcgatttagtgtttctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcactttt 37770689  T
Q  443 gattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||  |||| | ||||| |||||| | |||| |||||||||||||    
T  37770688 gattctggatcaggagtcaattctttagatcaattttggttttgggc 37770642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 14566405 - 14566489
Alignment:
Q  367 ggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagat 452  Q
    ||||||||||||||||||  ||||| |||||||||  |||| |||||||| |||||||| |||| |||||| || |||||||||||    
T  14566405 ggtgtttctctggtggact-ggggttaggggtgcccgtctggtttggtcctgaagtctgatggggcgatcgattctgattcgagat 14566489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 7695986 - 7696043
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| |||||||||||| | ||| |||||||||||||| ||||||| ||||||||||    
T  7695986 cgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggc 7696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 41086905 - 41086825
Alignment:
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatc 453  Q
    |||||||||| ||||||||| |||| |||| ||||| |||||||    ||||||||||||| ||| ||||||||||||||||    
T  41086905 ttctctggtgtaccaggggtgaggg-tgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 23650396 - 23650444
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttcttt 468  Q
    |||||||||||  ||||||||||||||||||||||| ||||| ||||||    
T  23650396 agtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 30967206 - 30967143
Alignment:
Q  426 gtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| |||| | ||||||| |||||| |||||||||||||| ||||||||| | |||||||    
T  30967206 gtgggtcaatcgttattgattcaagatcgaaagtcagttctttgattcaagttttgctttgggc 30967143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 674
Target Start/End: Original strand, 20572265 - 20572341
Alignment:
Q  596 gtttcatttagacggatgttctttcgggatgagtagtggtgattggtggtttatggatattgtttttcagttgtcgttt 674  Q
    |||||||||||| || |||||||| | | |||||||||| || |||||| |||||||||| |||||||||| |||||||    
T  20572265 gtttcatttagaggggtgttcttttgaggtgagtagtggcga-tggtgg-ttatggatatcgtttttcagtggtcgttt 20572341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 764
Target Start/End: Complemental strand, 22884784 - 22884746
Alignment:
Q  726 ttcgtcttgagcaaagatttggtttttaaatgaaatttg 764  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  22884784 ttcgtcttgagcagagatttggtttttaaataaaatttg 22884746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 10524108 - 10524149
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtca 461  Q
    ||||||||||| ||||| |||||||||||||||||| |||||    
T  10524108 agtctggtgggccgatcacttttgattcgagatcgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 5e-43; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 233 - 487
Target Start/End: Complemental strand, 32935592 - 32935342
Alignment:
Q  233 atttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagt 332  Q
    |||||||||||||||||||||||  | |||||| |     |||||||||||||||||||||||| |||||  |||||||||||  || |||||  | |||    
T  32935592 atttgattgatgtttgcaccaccacatatcatgaca----tcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagt 32935497  T
Q  333 tagtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtc 432  Q
    | |||| ||| ||||||| | |||||||   |||||||||||| || |||| | ||||| |||||| || ||||| |||||||| ||||||||||||| |    
T  32935496 tggtgtctagctgcaatcttctttggcttgttatggtgtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggcc 32935397  T
Q  433 gatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgg 487  Q
    ||||||||||||||||||||||| ||||||||||| |  ||||||||| ||||||    
T  32935396 gatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 245 - 553
Target Start/End: Original strand, 9223878 - 9224185
Alignment:
Q  245 tttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagat 344  Q
    ||||| |||||| ||||||||| ||||||||||| | ||||||| ||||| ||||||| ||||||| ||||  ||||||||  |||||| |||| |   |    
T  9223878 tttgctccaccgcaaatcatgttgattgtcttactttttgtgtgatggatgctggtgggccggtta-ttttgcttcgagatcgggagttggtgtctttct 9223976  T
Q  345 gcaatcatgtttgg-ctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttg 443  Q
    |||||| ||||| | | |||| ||||||| || ||||||||| ||||| |||| |||| || |   |||||||  ||||||||||||  |||||||||||    
T  9223977 gcaatcttgttttgaccgactttggtgttcctttggtggaccgggggtgaggg-tgcccttttaagttggtcctaaagtctggtgggctgatcgcttttg 9224075  T
Q  444 attcgagatcggaagtcagttctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaat 543  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||       || | |||||||||| || |||||||| | ||||||| ||| |||||    
T  9224076 attcgagatcgggagtcagttctttggttcagttttggttttgggcttttattggtgctctttcggtgcaccggaggttgtgcggtggtggaagctgaat 9224175  T
Q  544 gatctttaga 553  Q
    ||||||||||    
T  9224176 gatctttaga 9224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 227 - 553
Target Start/End: Complemental strand, 26534981 - 26534653
Alignment:
Q  227 ttttttatttgattgatg-tttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggt-ccggttacttttagttcgaga 324  Q
    |||||||||||||||| | ||||||| |||| |||  ||||| |||||||||| | ||||||| ||||| |||||||  ||||||| ||||  |||||||    
T  26534981 ttttttatttgattgacgctttgcacaaccgcaaactatgtcaattgtcttactttttgtgtgttggatactggtggggccggtta-ttttgcttcgaga 26534883  T
Q  325 ttcggagttagtgtttagatgcaatcatgttt-ggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtc 423  Q
    |  |||| | |||| |   ||||||| | ||| ||| |||| ||||||||||||||| ||||  |||| |||  || | ||||| |||||||| ||||||    
T  26534882 tcgggagctggtgtctttctgcaatcttcttttggcagact-tggtgtttctctggtagaccgcgggtgagg--tggccttctgatttggtcctgaagtc 26534786  T
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagt---tctttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggagg 520  Q
    ||||||| ||||| ||||||||||||||| || |||||||   ||||||||||||||||||||||||||       || ||||||||||||||| | |||    
T  26534785 tggtgggccgatcacttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttttttaggtgttctttcggtggaccgaagg 26534686  T
Q  521 ttgagaggtggtgaaagttgaatgatctttaga 553  Q
    ||| | ||||||| ||| ||| |||||||||||    
T  26534685 ttgtgcggtggtggaagctgattgatctttaga 26534653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 234 - 485
Target Start/End: Original strand, 12793940 - 12794191
Alignment:
Q  234 tttgattgatgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagtt 333  Q
    |||||||||| ||||| |||||  ||||||||||  ||||||||| ||||||||||||||||||| |||  ||||  |||||  ||||||||  ||||||    
T  12793940 tttgattgatatttgctccacctcaaatcatgtcatttgtcttacttattgtgtgctggattctgatgggtcggtc-cttttgcttcgagatcgggagtt 12794038  T
Q  334 agtgtttagatgcaatcatgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcg 433  Q
     | || ||    || |   |||||| || ||||||||||||||| ||| ||||||||||||||||| | |||||||||||| |  |||||| ||||| ||    
T  12794039 ggagtctaacaacattatcgtttggttggctatggtgtttctctagtgaaccaggggtaaggggtgtccttctgttttggttctaaagtctagtgggccg 12794138  T
Q  434 atc-gcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    |||  |||||||||||||||| | ||||||||||| ||| ||||||| |||||    
T  12794139 atcaacttttgattcgagatcaggagtcagttcttgggtccaagtttagtttt 12794191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 352 - 479
Target Start/End: Complemental strand, 33968751 - 33968624
Alignment:
Q  352 tgtttggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgaga 451  Q
    ||||||| || ||| ||||||||||||||| |||  ||||| |||||| | ||||| ||||||   | ||||| |||||| |||||||||||||||||||    
T  33968751 tgtttggttggctacggtgtttctctggtgaaccgagggtatggggtggccttctgatttggttatgtagtctagtgggtagatcgcttttgattcgaga 33968652  T
Q  452 tcggaagtcagttctttggttcaagttt 479  Q
    |||| |||||||||||||||||||||||    
T  33968651 tcgggagtcagttctttggttcaagttt 33968624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 20701927 - 20701744
Alignment:
Q  366 tggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttc 465  Q
    |||| ||||||||||| ||| ||||| ||||||||| ||||| |||||||    || |||||| | ||||| |||||||||||||||||| ||| |||||    
T  20701927 tggtttttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttc 20701828  T
Q  466 tttggttcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatcttt 550  Q
    ||||| | ||||||||||||||||       ||  |||||||||||||  |||||| ||||||| ||| ||| ||||||||||||    
T  20701827 tttggcttaagtttggttttgggctttttatgg-tttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatcttt 20701744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 21266113 - 21266193
Alignment:
Q  409 tttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||  ||| |||||||| |||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  21266113 tttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggc 21266193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 26216090 - 26216020
Alignment:
Q  419 aagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||  |||||||||||||    
T  26216090 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggc 26216020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 21264986 - 21265066
Alignment:
Q  409 tttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    |||||||| |||| || ||||| |||| ||||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  21264986 tttggtcctgaagactagtgggccgatagcttttgattcgagatcgggagttagttatctggttcaagtttggttttgggc 21265066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 553
Target Start/End: Complemental strand, 13098781 - 13098509
Alignment:
Q  272 gtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggctgactatggtgt 371  Q
    ||||||| | |||||||||| |||||| ||| ||||||||||||  ||||||||| |||||| | || ||| |||| || ||| |||      ||||| |    
T  13098781 gtcttactttttgtgtgctgcattctgatgggccggttacttttgcttcgagattgggagttggcgtctagctgcattcttgtctgg------atggtat 13098688  T
Q  372 ttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggt 471  Q
    | || ||||||||| |||||||||||||||  |||| ||  |||| ||||||| |||   ||||| ||| |||||| |||| || ||| ||||||||||     
T  13098687 t-ctttggtggacc-ggggtaaggggtgcccatctggttgagtcctgaagtctagtgcaacgatctcttctgattcaagattgggagttagttctttggc 13098590  T
Q  472 tcaagtttggttttgggcnnnnnnnggcgttctttcggtggactggaggttgagaggtggtgaaagttgaatgatctttaga 553  Q
    |||||||||||||| |||        | ||||||||||||| |||||||||| | || |||| ||| ||| |||||||||||    
T  13098589 tcaagtttggtttttggcttttttt-gtgttctttcggtggtctggaggttgtgtggaggtggaagatgattgatctttaga 13098509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 450
Target Start/End: Complemental strand, 3880830 - 3880623
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    |||||||||||||  | ||||||||  |||||  || | |||| |||||| ||| ||||| || |||||||||  || |||||  |||||  |||| |||    
T  3880830 tgtttgcaccaccacatatcatgtcctttgtcagactttttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctag 3880731  T
Q  343 atgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttt 441  Q
     ||| ||| |||||||| ||| | |||||||||||||||  |||  |||| || |||||| ||||| ||||||||  |||| ||||||| ||||| ||||    
T  3880730 ctgctatcttgtttggcatgatt-tggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttt 3880632  T
Q  442 tgattcgag 450  Q
    |||||||||    
T  3880631 tgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 3117508 - 3117573
Alignment:
Q  424 tggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||| ||||| |||||||||| ||||||| |||||||||||||  ||||||| | ||||||||    
T  3117508 tggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggc 3117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 769
Target Start/End: Complemental strand, 4043389 - 4043344
Alignment:
Q  724 tattcgtcttgagcaaagatttggtttttaaatgaaatttgctgtt 769  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  4043389 tattcgtcttgagcagagatttgatttttaaataaaatttgctgtt 4043344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 13423489 - 13423546
Alignment:
Q  432 cgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||| |||||||||||||||||  |||| ||||||||| |||||||||||| |||||    
T  13423489 cgatcacttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggc 13423546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 475
Target Start/End: Original strand, 15943965 - 15944085
Alignment:
Q  355 ttggctgactatggtgtttctctggtggaccaggggtaaggggtgc-cattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatc 453  Q
    |||| |||||| ||||||||||||||||||||| |||| ||||||| | ||| |  ||||||  ||||| ||||| | ||||| ||||||||| ||| ||    
T  15943965 ttggttgactacggtgtttctctggtggaccagaggtatggggtgcacgttcag-attggtcttgaagtttggtgagccgatcacttttgattagagttc 15944063  T
Q  454 ggaagtcagttctttggttcaa 475  Q
     | ||||||||| |||||||||    
T  15944064 tggagtcagttccttggttcaa 15944085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 16510427 - 16510323
Alignment:
Q  364 tatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagt 463  Q
    |||||| ||||||||||| |||  ||| |||||||||| | ||  |||||| |  |||||| ||||| ||||| ||||||||||||||| |  |||||||    
T  16510427 tatggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagt 16510328  T
Q  464 tcttt 468  Q
    |||||    
T  16510327 tcttt 16510323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 34090374 - 34090418
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagtt 464  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 34092806 - 34092866
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttg 480  Q
    ||||||||| | ||||| ||||||||||||||| |||||||  ||||||| ||||||||||    
T  34092806 agtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtttg 34092866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 32316397 - 32316438
Alignment:
Q  438 cttttgattcgagatcggaagtcagttctttggttcaagttt 479  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  32316397 cttttgattcgagatcggtagtaagttctttgattcaagttt 32316438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 243 - 489
Target Start/End: Original strand, 19216 - 19463
Alignment:
Q  243 tgtttgcaccaccgtaaatcatgtcgattgtcttacatattgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttag 342  Q
    ||||||||||||| |  ||||||||| |||||||||   |||| |||||| | | | |||  |||||| ||||  ||||||||  |||||  |||| |||    
T  19216 tgtttgcaccaccatctatcatgtcgtttgtcttactgtttgtatgctggttcccgatgggtcggttaattttgcttcgagatcgggagtcggtgtctag 19315  T
Q  343 atgcaatcatgttt-ggctgactatggtgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttt 441  Q
     |||| || ||||| |||| | | || ||||||||||||  ||||  ||| ||||||||| ||||| ||||||||  |||||||||||| ||||| ||||    
T  19316 ctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttt 19415  T
Q  442 tgattcgagatcggaagtcagttctttggttcaagtttggttttgggc 489  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19416 tgattcgagatcggaagtcagttctttggctcaagtttggttttgggc 19463  T

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Target: scaffold0119 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 369 - 488
Target Start/End: Complemental strand, 42259 - 42140
Alignment:
Q  369 tgtttctctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttcttt 468  Q
    ||||||||||||  ||||  ||| ||||||||| ||||| ||| ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  42259 tgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttcttt 42160  T
Q  469 ggttcaagtttggttttggg 488  Q
    || |||||||||||||||||    
T  42159 ggctcaagtttggttttggg 42140  T

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Target: scaffold0050 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 469
Target Start/End: Original strand, 36580 - 36767
Alignment:
Q  282 ttgtgtgctggattctggtggtccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc-tgactatggtgtttctctggt 380  Q
    ||||||| ||| ||| ||||| ||| ||| ||||  ||||||||  |||||  |||| ||| ||||||  |||||||| ||| | |||||||||||||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaattttgtttggcgtgatt-tggtgtttctctggt 36678  T
Q  381 ggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttg 469  Q
    | |||  | || ||||||||| ||||| ||||||||  |||||||| |||  |||| |||||||||||||||||| |||||||||||||    
T  36679 gtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttg 36767  T

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Target: scaffold0063 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 485
Target Start/End: Original strand, 58022 - 58203
Alignment:
Q  304 ccggttacttttagttcgagattcggagttagtgtttagatgcaatcatgtttggc-tgactatggtgtttctctggtggaccaggggtaaggggtgcca 402  Q
    ||||||||||||  ||||||||  |||||   ||| ||| ||||||| |||||||| ||| | |||||||||||||||| |||  ||||    ||||||     
T  58022 ccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatt-tggtgtttctctggtgtacctagggtgtatggtgccc 58120  T
Q  403 ttctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttggtttt 485  Q
    ||| | ||||||||  |||| ||||||| ||||| |||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  58121 ttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtttggtttt 58203  T

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Target: scaffold0499 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 485
Target Start/End: Original strand, 6525 - 6634
Alignment:
Q  375 tctggtggaccaggggtaaggggtgccattctgttttggtccagaagtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttca 474  Q
    ||||||||||| | |||||||||||||  |||| ||  |||| |||||||||||   ||||| |||||||||| |||| || ||| |||||||||| |||    
T  6525 tctggtggacc-gaggtaaggggtgcccatctggttgagtcctgaagtctggtgcaacgatctcttttgattcaagattggtagttagttctttggctca 6623  T
Q  475 agtttggtttt 485  Q
    |||||||||||    
T  6624 agtttggtttt 6634  T

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Target: scaffold0620 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 8140 - 8200
Alignment:
Q  420 agtctggtgggtcgatcgcttttgattcgagatcggaagtcagttctttggttcaagtttg 480  Q
    ||||||||| | ||||| ||||||||||||||| |||||||  ||||||| ||||||||||    
T  8140 agtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtttg 8200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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