View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20940_high_10 (Length: 289)

Name: NF20940_high_10
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20940_high_10
NF20940_high_10
[»] chr1 (3 HSPs)
chr1 (103-276)||(47066079-47066252)
chr1 (1-75)||(47066280-47066354)
chr1 (103-204)||(47058478-47058573)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 47066252 - 47066079
Alignment:
Q  103 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgattcttagccaaaatgttatag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47066252 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgatacttagccaaaatgttatag 47066153  T
Q  203 gtttttgagcannnnnnnaccaccaggttttattgcccatttgaagctatgtgatattgatgaaacatatgaga 276  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47066152 gtttttgagcatttttttaccaccaggttttattgcccatttgaagctatgtgatattgatgaaacatatgaga 47066079  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 47066354 - 47066280
Alignment:
Q  1 gcgaagagatgatgctaaattgtaaataatcaagccaggatgaataaatagtaacttctgattaaatagttctga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47066354 gcgaagagatgatgctaaattgtaaataatcaagccaggatgaataaatagtaacttctgattaaatagttctga 47066280  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 47058573 - 47058478
Alignment:
Q  103 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgattcttagccaaaatgttatag 202  Q
    |||||||||||| |||| || ||||| |||||||| || |||||||| |||||| |||||| | ||||||      ||||||||||||||| ||||||||    
T  47058573 gttcaataaaaatgtagaatgtcactcaaaaatttatcagtttaaaattgttcactctctcgtctcttca------tgattcttagccaaagtgttatag 47058480  T

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