View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_high_8 (Length: 302)
Name: NF20940_high_8
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1962577 - 1962868
Alignment:
| Q |
1 |
gtcacatgctccattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962577 |
gtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
1962676 |
T |
|
| Q |
101 |
tgaactctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962677 |
tgaactctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtcctt |
1962776 |
T |
|
| Q |
201 |
aactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
292 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962777 |
aactttaagggcaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
1962868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2015852 - 2015561
Alignment:
| Q |
1 |
gtcacatgctccattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015852 |
gtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatccttcaaactcttccatcaaacatcagctgtacttttcttccaccag |
2015753 |
T |
|
| Q |
101 |
tgaactctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtcctt |
200 |
Q |
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||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015752 |
tgaactccaatgacctaccacaagggattgctttagtacttcaacttcagctcacactgactcactcactgccatctatacatcaggccttgaagtcctt |
2015653 |
T |
|
| Q |
201 |
aactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
292 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2015652 |
aactttaaagacaccctttgttgccttggtggttgatatatcagcaatggatgcactggattttgctaaggaattcaacttgttgtcctatg |
2015561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2019235 - 2018944
Alignment:
| Q |
1 |
gtcacatgctccattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
100 |
Q |
| |
|
|||||||| | |||||||||| ||| ||||||||||| ||||||||||| || || ||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2019235 |
gtcacatgtttcattccctcaattgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcag |
2019136 |
T |
|
| Q |
101 |
tgaactctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtcctt |
200 |
Q |
| |
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||| ||| || ||| ||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2019135 |
tgagctccaaagacttaccacaagggattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtcctt |
2019036 |
T |
|
| Q |
201 |
aactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||| |||||||||||| |
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| T |
2019035 |
aactttaaggacaccctttgttgccttggtggttgattcattagcaatcgatgcactagattttgctaaagagttcaacatgttgtcctatg |
2018944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2005458 - 2005333
Alignment:
| Q |
1 |
gtcacatgctccattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
100 |
Q |
| |
|
|||||||| | ||||||||||||||| |||| | ||||| ||||| | || ||| ||||||||||||||||||||| | ||||||||||||||| | |
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| T |
2005458 |
gtcacatgtttcattccctcacttggatctccctcaactaccacaaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctg |
2005359 |
T |
|
| Q |
101 |
tgaactctaatgacctaccacaaggg |
126 |
Q |
| |
|
||||| |||||||||||||||||||| |
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| T |
2005358 |
tgaaccctaatgacctaccacaaggg |
2005333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 2008780 - 2008713
Alignment:
| Q |
59 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggg |
126 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||| |
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| T |
2008780 |
aaactcttccatcaaacatcaaccacacttttcttccacctgtgaaccccaatgacctaccacaaggg |
2008713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1968177 - 1968302
Alignment:
| Q |
1 |
gtcacatgctccattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccag |
100 |
Q |
| |
|
|||||||| | ||||||| ||||||| |||| | ||| || ||||| | || ||| ||||||||||||||||||||| | |||||||||||||| | |
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| T |
1968177 |
gtcacatgtttcattcccacacttggatctccctcaaatgccacaaaatctatccttcaaactcttccatcaaacatcaaccacacttttcttccacctg |
1968276 |
T |
|
| Q |
101 |
tgaactctaatgacctaccacaaggg |
126 |
Q |
| |
|
|||| | |||||||||||||||||| |
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| T |
1968277 |
tgaatcccaatgacctaccacaaggg |
1968302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 2012251 - 2012163
Alignment:
| Q |
203 |
ctttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctat |
291 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||| || || |||| |||||| | |||||||| ||||||||| ||||||||||| |
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| T |
2012251 |
ctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
2012163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 5901924 - 5902047
Alignment:
| Q |
169 |
ctgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgcta |
268 |
Q |
| |
|
||||||| | |||||||||| ||||| ||||||||||||||||| ||| ||| || ||||||||||| | ||| | || ||||||||||| |||| |
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| T |
5901924 |
ctgccatatttacatcaggcattgaactccttaactttaaggactccccctgtggcactggtggttgattctttatctgccgaagcactagatttggcta |
5902023 |
T |
|
| Q |
269 |
aggaattcaacttgttgtcctatg |
292 |
Q |
| |
|
|||| |||||| |||||||||||| |
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|
| T |
5902024 |
aggagttcaacatgttgtcctatg |
5902047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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