View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20940_low_12 (Length: 289)

Name: NF20940_low_12
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20940_low_12
NF20940_low_12
[»] chr1 (3 HSPs)
chr1 (103-276)||(47066079-47066252)
chr1 (1-75)||(47066280-47066354)
chr1 (103-204)||(47058478-47058573)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 47066252 - 47066079
Alignment:
Q  103 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgattcttagccaaaatgttatag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47066252 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgatacttagccaaaatgttatag 47066153  T
Q  203 gtttttgagcannnnnnnaccaccaggttttattgcccatttgaagctatgtgatattgatgaaacatatgaga 276  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47066152 gtttttgagcatttttttaccaccaggttttattgcccatttgaagctatgtgatattgatgaaacatatgaga 47066079  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 47066354 - 47066280
Alignment:
Q  1 gcgaagagatgatgctaaattgtaaataatcaagccaggatgaataaatagtaacttctgattaaatagttctga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47066354 gcgaagagatgatgctaaattgtaaataatcaagccaggatgaataaatagtaacttctgattaaatagttctga 47066280  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 47058573 - 47058478
Alignment:
Q  103 gttcaataaaaaggtagcatatcactgaaaaatttgtctgtttaaaactgttcattctctcatatcttcatgtatgtgattcttagccaaaatgttatag 202  Q
    |||||||||||| |||| || ||||| |||||||| || |||||||| |||||| |||||| | ||||||      ||||||||||||||| ||||||||    
T  47058573 gttcaataaaaatgtagaatgtcactcaaaaatttatcagtttaaaattgttcactctctcgtctcttca------tgattcttagccaaagtgttatag 47058480  T

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