View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_2 (Length: 619)
Name: NF20940_low_2
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 10 - 603
Target Start/End: Original strand, 2800673 - 2801266
Alignment:
| Q |
10 |
aagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800673 |
aagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatt |
2800772 |
T |
|
| Q |
110 |
tgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800773 |
tgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgttt |
2800872 |
T |
|
| Q |
210 |
atcgaatttgctaaattttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaattttatg |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2800873 |
atcgaatttgctaaattgtattagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaattttatg |
2800972 |
T |
|
| Q |
310 |
atattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800973 |
atattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttat |
2801072 |
T |
|
| Q |
410 |
ctcacaaccagtaaccaaataaccactatcagaatgttggaaaggtgcagccttgctagaattgggaataagtaccgtaactttaacaatgctttctaag |
509 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2801073 |
gtcacaaccagtaaccaaataaccactataagaatgttggaaaggtgcagccttgctagaattgggaataaataccgtaactttaacaatgctttctaag |
2801172 |
T |
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| Q |
510 |
tagaagtgcttttaaaaacgacacatagacttaagacagatcttttgtgttgaaacactgttgtaaataagctcttttatagatagtattaaat |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801173 |
tagaagtgcttttaaaaacgacacatagacttaagacagatcttttgtgttgaaacactgttgtaaataagctcttttatagatagtattaaat |
2801266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 10 - 603
Target Start/End: Complemental strand, 1680055 - 1679462
Alignment:
| Q |
10 |
aagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680055 |
aagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatt |
1679956 |
T |
|
| Q |
110 |
tgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679955 |
tgctctggctagatctgtaacaatagattaaggcctactggttaggaatttagataacatatattaatatgttcaatctgtgtgtattctgtttatgttt |
1679856 |
T |
|
| Q |
210 |
atcgaatttgctaaattttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaattttatg |
309 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1679855 |
atcgaatttgctaaattgtataagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaattttatg |
1679756 |
T |
|
| Q |
310 |
atattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679755 |
atattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttat |
1679656 |
T |
|
| Q |
410 |
ctcacaaccagtaaccaaataaccactatcagaatgttggaaaggtgcagccttgctagaattgggaataagtaccgtaactttaacaatgctttctaag |
509 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1679655 |
atcacaaccagtaaccaaataaccactataagaatgttggaaaggtgcagccttgctagaattgggaataagtaccgtaactttaacaacgctttctaag |
1679556 |
T |
|
| Q |
510 |
tagaagtgcttttaaaaacgacacatagacttaagacagatcttttgtgttgaaacactgttgtaaataagctcttttatagatagtattaaat |
603 |
Q |
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| T |
1679555 |
tagaagtgcttttaaaaacgacacatagacttaagacagatcttttgtgttgaaacactgttgtaaataagctcttttatagatagtattaaat |
1679462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 2802666 - 2802715
Alignment:
| Q |
373 |
catctgtttctacatctagatttcattaactgtttatctcacaaccagta |
422 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
2802666 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
2802715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 1659058 - 1659017
Alignment:
| Q |
236 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
277 |
Q |
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||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
1659058 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
1659017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 2802556 - 2802597
Alignment:
| Q |
236 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
277 |
Q |
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||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
2802556 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
2802597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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