View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_3 (Length: 440)
Name: NF20940_low_3
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 188 - 429
Target Start/End: Original strand, 32927005 - 32927244
Alignment:
| Q |
188 |
tcgaggacaaattgtt-acttttttactactatgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
286 |
Q |
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| T |
32927005 |
tcgaggacaaattgttcactttttcacta---tgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
32927101 |
T |
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| Q |
287 |
cagttcattcacgttttcagtaaatggaagcaaagagttcaatcnnnnnnnaaccaaattaagcacagaaaattccaaaaacacatgaataataagataa |
386 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32927102 |
cagttcattcacgtttgcagtaaatggaagcaaagagttcaatctttttttaaccaaatgaagcacagaaaattccaaaaacacatgaataataagataa |
32927201 |
T |
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| Q |
387 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
429 |
Q |
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| T |
32927202 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
32927244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 32926812 - 32926966
Alignment:
| Q |
37 |
atttgattgtatttggtaaagatgcgtctctagcacaaagcttcaaattacgtcaaaatagagaatgtattccgcatatatataaacggtgtgatgtggt |
136 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
32926812 |
atttgattgtatttggtaaagatgcgtctctaggacaaagcttcaaattacatcaaaatagagaatgtattccatatataaacggccggtgtgatgtggt |
32926911 |
T |
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| Q |
137 |
aaaataaagaaaagtgaagatcaaatttaatacttcacaatttttaataggtcga |
191 |
Q |
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| T |
32926912 |
aaaataaagaagagtgaagatcaaatttaatccttcataatttttaataggtcga |
32926966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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