View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_4 (Length: 376)
Name: NF20940_low_4
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 49905399 - 49905056
Alignment:
| Q |
15 |
gcataggtagtgtagttagtgcaat-----ggagtagtcaattgtcacattgttaattctaggacaaaaggaccaaaaacttgggcatcagggtaaagaa |
109 |
Q |
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| T |
49905399 |
gcataggtagtgtagttagtgcaatataatggagtagtcagttgtcacattgttaattctaggacaaaaggaccaaaaacttgggcatcagggtaaagaa |
49905300 |
T |
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| Q |
110 |
ttttcgataaataggtataggaaagtaacttgtgcataatgttaatgtacaatacaatacaagtcccagggtgagagaatcagtgtcatcatattctnnn |
209 |
Q |
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| T |
49905299 |
ttttcgataaataggtataggaaagtaacttgtgcataatgttaatgtacaatacaatacaagtcccagggtgagagaatcagtgtcatcatattctccc |
49905200 |
T |
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| Q |
210 |
nnnnnnnnnnaatactcataacatcatttactcttgcagagtggggggccaaagctcttttctgttttaggggtcccctgcatttttaagggagaatatg |
309 |
Q |
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| T |
49905199 |
ccaaccccccaatactcataacatcatttactcttgcagagtggggggccaaagctcttttctgttttaggggtcccctgcatttttaagggagaatatg |
49905100 |
T |
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| Q |
310 |
ttcttttcattttggctttcaattccctattttgatgaatacca |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49905099 |
ttcttttcattttggctttcaattccctattttgatgaatacca |
49905056 |
T |
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