View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_5 (Length: 376)
Name: NF20940_low_5
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 53681573 - 53681235
Alignment:
| Q |
11 |
cacagactaacttgtgaagctgatcaaattgcaacaaggatcgatgagtacacaaaatttgagtcaagtgtttttgtgctgctagtatttaattatcaga |
110 |
Q |
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| T |
53681573 |
cacagactaacttgtgaagctgatcaaattgcaacaaggat----gagtacacaaaatttgagtcaagtgtttttgtgctgctagtatttaattatcaga |
53681478 |
T |
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| Q |
111 |
tagaagggatttgtttttgcagtcatcaactattatagaaatgaatatggttccatcaatactttgatgatgattccgcatccctcttatggttagtact |
210 |
Q |
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| T |
53681477 |
tagaagggatttgtttttgcagtcatcaactattatagaaatgaatatggttccatcaatactttgatgatgattccgcatccctcttatggttagtact |
53681378 |
T |
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| Q |
211 |
agtactatttgaaaatttcattagatttatgtcaccattttcttttgagatatttccttgttgaacttgaaatttcttgataccaaaataagccaaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681377 |
agtactatttgaaaatttcattagatttatgtcaccattttcttttgagatatttccttgttgaacttgaaatttcttgataccaaaataagccaaggaa |
53681278 |
T |
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| Q |
311 |
tcacacacatttgttcactcaaattgcatgtgaatatgaatat |
353 |
Q |
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| T |
53681277 |
tcacacacatttgttcactcaaattgcatgtgaatatgaatat |
53681235 |
T |
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