View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_6 (Length: 347)
Name: NF20940_low_6
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 47117040 - 47117375
Alignment:
| Q |
1 |
agtccattttattattacccaaaaataaaattatagtttctgaggggtgatatat--atagtgtgatatcgttacttatgtaagaaattctgatagcaaa |
98 |
Q |
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| T |
47117040 |
agtccattttattattacccaaaaataaaattatagtttctgaggggtgatatatttatagtgtgatatcgtcacttatgtaagaaattctgatagcaaa |
47117139 |
T |
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| Q |
99 |
tgtgaagaaaaatatatcggtgaaggatggtataagtttacgagtgatagcactttgagtatttgtgacgtgttggtttttgaagtatcccgaattttct |
198 |
Q |
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| T |
47117140 |
tatgaagaaaaatatatcggtgaaggacggtataagtttacgagtgatagcagtttgagtatttgtgacgtgttggtttttgaagtatcccgaattttct |
47117239 |
T |
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| Q |
199 |
ttctgctcgggttgttccttctgagatatgtcactgatctaatgaattgttattgtggtttctaatttttagtgttgttcttcttaaaaaagaatatgtt |
298 |
Q |
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| T |
47117240 |
ttctgctcgggttgttccttctgagatatgtcactgatctgatgaattgttattgtggtttctaatttttagtgttgttctttttaaaaaagaatatgtt |
47117339 |
T |
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| Q |
299 |
ggtttcaatttgatcttttgttttcatgttttttgt |
334 |
Q |
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| T |
47117340 |
ggtttcaatttgatcttttgttttcatgttttttgt |
47117375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 58 - 334
Target Start/End: Complemental strand, 3507414 - 3507138
Alignment:
| Q |
58 |
agtgtgatatcgttacttatgtaagaaattctgatagcaaatgtgaagaaaaatatatcggtgaaggatggtataagtttacgagtgatagcactttgag |
157 |
Q |
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| T |
3507414 |
agtgtgacttcgtcacttatgtaagaaatcatgatagcaaatgtgaataaaaatataccggtgaaggatggtataagtttccgagtgataatagtttaag |
3507315 |
T |
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| Q |
158 |
tatttgtgacgtgttggtttttgaagtatcccgaattttctttctgctcgggttgttccttctgagatatgtcactgatctaatgaattgttattgtggt |
257 |
Q |
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| T |
3507314 |
ttttggtgacgtgttggttttttatgtatcccagattttctttctgttagggttgttccttctaagatatctcagtgatctaatgaattgttattgtggt |
3507215 |
T |
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| Q |
258 |
ttctaatttttagtgttgttcttcttaaaaaagaatatgttggtttcaatttgatcttttgttttcatgttttttgt |
334 |
Q |
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| T |
3507214 |
ttctaatttttagtgttgttcttcttaaaaaaataaatgttggtttcaatttgattctttgctttcatgtcttttgt |
3507138 |
T |
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