View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20940_low_7 (Length: 340)
Name: NF20940_low_7
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_7 |
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| [»] scaffold0078 (3 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: scaffold0078 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 2471 - 2779
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2471 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaattaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
2570 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2571 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattctgttgatggaatcttgtttaacagtttctttgcattggaatcaagtgctataaaagcat |
2670 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2671 |
tggagcaaaagggtgatggaaaaatcgggttttttcccgtcggacctattacacaaatagggtcaagtaacaatgatgttgttggtgatgaacatgaatg |
2770 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
2771 |
tttgaaatg |
2779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 57014 - 57322
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||| | || |
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|
| T |
57014 |
atgtgaatacaaagatttaaaagaacctataaagttacaaggatgtttgccaatcaatggtattgatcttccaacaccaacaaaagatagatcaaatgaa |
57113 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||| |||| |||||||||||||||||||| || ||||| | ||| ||||| ||||||| |||||||| |
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|
| T |
57114 |
gcttacaaaatgcttcttcaacgtgcaaaaaatatgcatttggttgatggaatcttgtttaatagcttcttagaattagaatcaagtgctacaaaagcat |
57213 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
57214 |
tggaacaaaagggttatggaaaaatcgggttttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggtgatgaacatgaatg |
57313 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
57314 |
tttgaaatg |
57322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 21728 - 22033
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||| | || |
|
|
| T |
21728 |
atgtgaatacaaagatttacaagaacctataaagttacaagggtgtgtaccaatcaatggtattgatcttccagcagcaactaaagatagatcaaatgaa |
21827 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
| ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| | || || ||| ||| ||||||||| |||||||||||||||| |
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|
| T |
21828 |
ggttacaaaatgtatattcaacgtgcaaaaagtatgtattttgttgatggaatcttgatcaatagcttcattgaattggaatcaagtgctataaaagcat |
21927 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||| | ||||| | ||| |||||| | ||||||| || |||||||||||||||| ||||| |||||||||||| |||||| ||||||| |||||| |
|
|
| T |
21928 |
tggaactaaagggttatggaaaaattgatttttttcctgttggacccattacacaaacagggttaagtaacaatga---tgttggtgatgaacttgaatg |
22024 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
22025 |
tttgaaatg |
22033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 16566127 - 16566435
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16566127 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaattaatggtattgatcttcctacagtaacaaaagatagatcaggtcaa |
16566226 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
16566227 |
gcttacaaaatgtatcttcaacgtgctaaagatatgtgttttgttgatggaatcttgtttaacagtttctttgcattggaatcaagtgctataaaagctt |
16566326 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||||||||| | ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16566327 |
tggagcaaaatggtgatggaaaaatcgggttttttccggtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacttgaatg |
16566426 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
16566427 |
tttgaaatg |
16566435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 16599535 - 16599227
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16599535 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaattaatggtattgatcttcctacagtaacaaaagatagatcaggtcaa |
16599436 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
16599435 |
gcttacaaaatgtatcttcaacgtgctaaagatatgtgttttgttgatggaatcttgtttaacagtttctttgcattggaatcaagtgctataaaagctt |
16599336 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||||||||| | ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16599335 |
tggagcaaaatggtgatggaaaaatcgggttttttccggtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacttgaatg |
16599236 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
16599235 |
tttgaaatg |
16599227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 15830 - 15522
Alignment:
| Q |
18 |
atgtaaatacaaagatttacaagaacctataaagttacaaggatgtgtaccaatcaatggtattgatcttcatacagtaacaaaagatagatcaggtcaa |
117 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||| | || |
|
|
| T |
15830 |
atgtgaatacaaagatttaaaagaacctataaagttacaaggatgtttgccaatcaatggtattgatcttccaacaccaacaaaagatagatcaaatgaa |
15731 |
T |
|
| Q |
118 |
gcttacaaaatgtatcttcaacgtgctaaaggtatgtattttgttgatggaatcttgtttaacagtttctttgcattggaatccagtgctataaaagcat |
217 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||| |||| |||||||||||||||||||| || ||||| | ||| ||||| ||||||| |||||||| |
|
|
| T |
15730 |
gcttacaaaatgcttcttcaacgtgcaaaaaatatgcatttggttgatggaatcttgtttaatagcttcttagaattagaatcaagtgctacaaaagcat |
15631 |
T |
|
| Q |
218 |
tggagcaaaaggttgatgaaaaaatcgggctttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggcgatgaacatgaatg |
317 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15630 |
tggaacaaaagggttatggaaaaatcgggttttttcccgtcggacccattacacaaatagggtcaagtaacaatgatgttgttggtgatgaacatgaatg |
15531 |
T |
|
| Q |
318 |
tttgaaatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
15530 |
tttgaaatg |
15522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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