View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20940_low_8 (Length: 313)
Name: NF20940_low_8
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20940_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 1432654 - 1432456
Alignment:
| Q |
17 |
aaaacactgttaggatcatttaagttgctcttcaatgcaataagggtatcacctgtgctaaaaggaagcaatattcagattcaaacatccttaataatat |
116 |
Q |
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| T |
1432654 |
aaaacactgttaggatcatttaagttgctcttcaatgcaataagggtatcacctgtgctaaaaggaagcaatattcagtttcaaacatccttaataatat |
1432555 |
T |
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| Q |
117 |
tcagtaacttgaatttcgactttcattagacagccttagtagcatacacctaaatactaggctaactataatactatacattgaagcaaatgtgagaag |
215 |
Q |
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| T |
1432554 |
tcagtaacttgaacctcgactttcattagacagccttagtagcatacacctaaatactaggctaactataatactatacatcaaagcaaatgtgagaag |
1432456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 1432426 - 1432369
Alignment:
| Q |
244 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtat |
301 |
Q |
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| T |
1432426 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtat |
1432369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 1451330 - 1451260
Alignment:
| Q |
24 |
tgttaggatcatttaagttgctcttcaatgcaataagggtatcacctgtgctaaaaggaagcaatattcag |
94 |
Q |
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| T |
1451330 |
tgttaggatcatttaagttgctcttgaatgcaataagcatatcacctgtgctaaaacgaagcaatcttcag |
1451260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 1425574 - 1425499
Alignment:
| Q |
19 |
aacactgttaggatcatttaagttgctcttcaatgcaataagggtatcacctgtgctaaaaggaagcaatattcag |
94 |
Q |
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| T |
1425574 |
aacattgttaggatcattcaagttgctcttcaatgcattcagtgcatcacctgtgctaaaaagaaccaatcttcag |
1425499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 1445148 - 1445060
Alignment:
| Q |
24 |
tgttaggatcatttaagttgctcttcaatgcaataagggtatcacctgtgctaaaaggaagcaatattcagattcaaacatccttaata |
112 |
Q |
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| T |
1445148 |
tgttaggatcatttaagttgttcctgaatgcaaaaagggcatcacctgttctaaaaagaaacaatctttagttgcaaacatcgttaata |
1445060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 1451235 - 1451198
Alignment:
| Q |
138 |
ttcattagacagccttagtagcatacacctaaatacta |
175 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| |
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| T |
1451235 |
ttcactagtcagccttagtagcatacacctaaatacta |
1451198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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