View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20940_low_9 (Length: 302)

Name: NF20940_low_9
Description: NF20940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20940_low_9
NF20940_low_9
[»] chr8 (9 HSPs)
chr8 (19-296)||(1962309-1962581)
chr8 (152-296)||(2019231-2019375)
chr8 (20-296)||(2015848-2016129)
chr8 (156-296)||(2013381-2013522)
chr8 (175-296)||(2008834-2008955)
chr8 (175-296)||(1968060-1968181)
chr8 (174-296)||(2005454-2005576)
chr8 (180-281)||(2012464-2012565)
chr8 (177-256)||(1964500-1964581)
[»] chr1 (1 HSPs)
chr1 (174-297)||(5901638-5901761)
[»] chr3 (1 HSPs)
chr3 (175-291)||(18189425-18189541)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 1962309 - 1962581
Alignment:
Q  19 acatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagttgagttctgtttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  1962309 acatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagtt-----ctgtttt 1962403  T
Q  119 tggttttcctttcacaagcatnnnnnnntattaacttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctgg 218  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962404 tggttttcctttcacaagcataaaaaaatattaacttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctgg 1962503  T
Q  219 tgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatctcac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1962504 tgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatgtcac 1962581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 2019375 - 2019231
Alignment:
Q  152 acttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttca 251  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  2019375 acttataagctgtaaactaataactaattttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttca 2019276  T
Q  252 attctccaaactacttgttcagcttcatccatactttcatctcac 296  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||    
T  2019275 attctccaagctacttgttcagcttcatccatactttcatgtcac 2019231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 2016129 - 2015848
Alignment:
Q  20 catgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagttgagttctgttttt 119  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||  |||||||||| |||||| |||||| ||||||     ||||||||    
T  2016129 catgtgtggctcttattcat-cgttttgaaacttgtcaaacacatacataatgtcaattttgcagagcatgtagaggtaggtgagtt-----ctgttttt 2016036  T
Q  120 ggttttcctttcacaagcatnnnnnnntattaac-----------ttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcag 208  Q
    ||||||||||||||||||||        |  ||            |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  2016035 ggttttcctttcacaagcataaaaaaaaaaaaaaaaaaaaaaaagttataagcggtaaactaagaacaaatttttatggagaaaacaattcatattgcag 2015936  T
Q  209 ttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatctcac 296  Q
    ||||||| ||||||||||||||||| ||  || | |||||||||||||||||   ||||||||||||||||||| |||||||| ||||    
T  2015935 ttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatccaaactttcatgtcac 2015848  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 156 - 296
Target Start/End: Complemental strand, 2013522 - 2013381
Alignment:
Q  156 ataagctgtaaactaag-aacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaatt 254  Q
    ||||||||||||||||  ||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  2013522 ataagctgtaaactaaacaacaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaatt 2013423  T
Q  255 ctccaaactacttgttcagcttcatccatactttcatctcac 296  Q
     || || |||||||||||||||||||||||||||||| ||||    
T  2013422 ttcgaagctacttgttcagcttcatccatactttcatgtcac 2013381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 2008955 - 2008834
Alignment:
Q  175 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 274  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  |||| |||||||||||||||||   |||||||||||    
T  2008955 caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagc 2008856  T
Q  275 ttcatccatactttcatctcac 296  Q
    |||||||| |||||||| ||||    
T  2008855 ttcatccaaactttcatgtcac 2008834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 1968060 - 1968181
Alignment:
Q  175 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 274  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||  |||| |||||||||||||||||   ||||||||| |    
T  1968060 caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaac 1968159  T
Q  275 ttcatccatactttcatctcac 296  Q
    |||||||| |||||||| ||||    
T  1968160 ttcatccagactttcatgtcac 1968181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 2005576 - 2005454
Alignment:
Q  174 acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag 273  Q
    |||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||  || | |||||||||||||||||   |||||||||     
T  2005576 acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa 2005477  T
Q  274 cttcatccatactttcatctcac 296  Q
    ||||||||| |||||||| ||||    
T  2005476 cttcatccaaactttcatgtcac 2005454  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 2012565 - 2012464
Alignment:
Q  180 tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat 279  Q
    ||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||| ||||| ||  ||||| | |||||||||    
T  2012565 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcat 2012466  T
Q  280 cc 281  Q
    ||    
T  2012465 cc 2012464  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 1964500 - 1964581
Alignment:
Q  177 aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct 256  Q
    ||||| ||||||||||||  |||| |||||||||||||| ||||||||  ||||| ||| ||| || | |||||||||||||    
T  1964500 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 1964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 5901638 - 5901761
Alignment:
Q  174 acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag 273  Q
    |||||||||||||||||||||| |||| ||||| ||| |||| |||| | | |||||||| ||| || | |||||| |||||||||| ||||||||||||    
T  5901638 acaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcag 5901737  T
Q  274 cttcatccatactttcatctcact 297  Q
    || |||||| |||||||| |||||    
T  5901738 ctccatccagactttcatgtcact 5901761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 18189425 - 18189541
Alignment:
Q  175 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 274  Q
    ||||||| |||||| |||||| |||| |||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||| ||  ||||| | || |    
T  18189425 caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatc 18189524  T
Q  275 ttcatccatactttcat 291  Q
    |||||||| || |||||    
T  18189525 ttcatccagacattcat 18189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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