View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20941_high_5 (Length: 328)
Name: NF20941_high_5
Description: NF20941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20941_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 7743658 - 7743957
Alignment:
| Q |
24 |
tcatcattctatccctattcttaatttgtcacctaatttatatccctttcaacaggtagttaatgttgataatgtacggcagaaggttaccgtgaaacta |
123 |
Q |
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| T |
7743658 |
tcatcattctatccctattcttaatttgtcacctaatttatatccctttcaacaggtagtgaatgttgataatgtacggcagaaggttaccgtgaaacta |
7743757 |
T |
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| Q |
124 |
attccgaggatagatttacaagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgtt |
223 |
Q |
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| T |
7743758 |
attccgaggatagatttacaagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgtt |
7743857 |
T |
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| Q |
224 |
gaaaattggagtctccatttctttacaaaatgtatttgtcatgc----atgtagagaagttgtgaaaaagaagacatttggatcctcaagctaaggatga |
319 |
Q |
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| T |
7743858 |
gaaaattggagtctccatttatttacaaaatgtatttgtcatgcaggaaggtagagaagttgtgaaaaagaagacatttggatcctcaagctaaggatga |
7743957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 40865205 - 40865468
Alignment:
| Q |
40 |
attcttaatttgtcacctaatttatatccctttcaacaggtagttaatgttgataatgtacggcagaaggttaccgtgaaactaattccgaggatagatt |
139 |
Q |
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| T |
40865205 |
attcttaatttgtcacctaatttatatccctt-caacaggtagtggatgttgataatgtacggcagagggttagagtgaaactaattccgaggatagatt |
40865303 |
T |
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| Q |
140 |
tacaagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgttgaaaattggagtctcc |
239 |
Q |
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| T |
40865304 |
tacaggctctcgcaaacaaattggtatggaatgtttctgtcttgttgaatgcatgatttgtattgttgaattgttaatttcgttgaaaattcgagtccac |
40865403 |
T |
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| Q |
240 |
a-tttctttacaaaatgtatttgtcatgc----atgtagagaagttgtgaaaaagaagacatttg |
299 |
Q |
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| T |
40865404 |
attttctttacaaaatgtatttgtcatgcaggaaggtagagaagttgtgaaaaagaaggcatttg |
40865468 |
T |
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