View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20941_high_9 (Length: 303)
Name: NF20941_high_9
Description: NF20941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20941_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 32 - 290
Target Start/End: Original strand, 4215377 - 4215635
Alignment:
| Q |
32 |
atattctagacaaccatagtatttaagacatggctcccacacaattttcatctttaccttaattttgtgaaattattttttgaacttgcataggcacaat |
131 |
Q |
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| T |
4215377 |
atattctagacaaccataatatttaagacatggctcccacacaattttcatctttaccttaattttgtgaaattattttttgaacttgcgtaggcacaat |
4215476 |
T |
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| Q |
132 |
taattcattcacttctcatttaaggtaatcaataggtctataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaa |
231 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215477 |
taattcattcacttctcatttaaggaaatcaatagatctataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaa |
4215576 |
T |
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| Q |
232 |
taaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215577 |
taaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctct |
4215635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 4217947 - 4218131
Alignment:
| Q |
29 |
acaatattctagacaaccatagtatttaagacatggctcccacacaattttcatctttaccttaattttgtgaaattattttttgaacttgcataggcac |
128 |
Q |
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| T |
4217947 |
acaatattccggtcaaccttaatatttaa-acctggctcccacacagttttcagctttaccctaattttgtgaaattgttttct-atcacgcaaaaccac |
4218044 |
T |
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| Q |
129 |
aattaattcattcacttctcatttaaggtaatcaataggtctataaattggattcatatgaagccaatttcattccatgctaaacaa |
215 |
Q |
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| T |
4218045 |
aattaattcattcacttatcatttagagaaatcaacaattctataaattggagtactattgagtcaattttattccatgcaaaacaa |
4218131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 4053845 - 4053899
Alignment:
| Q |
126 |
cacaattaattcattcacttctcatttaaggtaatcaataggtctataaattgga |
180 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4053845 |
cacatttaattgattcacttctcatttaaggtaatcaatagtcctataaattgga |
4053899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 3925074 - 3925020
Alignment:
| Q |
126 |
cacaattaattcattcacttctcatttaaggtaatcaataggtctataaattgga |
180 |
Q |
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|||| |||||| ||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
3925074 |
cacatttaattgattcacttctcatttaaggtaataattagtcctataaattgga |
3925020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 11952648 - 11952603
Alignment:
| Q |
132 |
taattcattcacttctcatttaaggtaatcaataggtctataaatt |
177 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
11952648 |
taattcattcacttctcatttaaggaaatcactagttctataaatt |
11952603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 54726832 - 54726884
Alignment:
| Q |
228 |
aaaataaaaatactcattcatacactatggcaaaaatcactgcttcatttgtt |
280 |
Q |
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|||||||||||||| |||| || | ||||||||||| |||||||||||||||| |
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| T |
54726832 |
aaaataaaaatactgattcttatattatggcaaaaaccactgcttcatttgtt |
54726884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 5388875 - 5388922
Alignment:
| Q |
131 |
ttaattcattcacttctcatttaaggtaatcaataggtctataaattg |
178 |
Q |
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|||||||||||||||||||||||||| ||||| ||| || |||||||| |
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| T |
5388875 |
ttaattcattcacttctcatttaaggaaatcattagttcgataaattg |
5388922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 5398416 - 5398462
Alignment:
| Q |
131 |
ttaattcattcacttctcatttaaggtaatca-ataggtctataaat |
176 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
5398416 |
ttaattcattcacttctcatttaaggaaatcatatagttctataaat |
5398462 |
T |
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