View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20941_low_1 (Length: 680)

Name: NF20941_low_1
Description: NF20941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20941_low_1
NF20941_low_1
[»] chr2 (1 HSPs)
chr2 (13-663)||(33637309-33637956)
[»] chr4 (4 HSPs)
chr4 (353-661)||(13784358-13784666)
chr4 (121-242)||(13784126-13784247)
chr4 (378-422)||(10553569-10553613)
chr4 (378-422)||(10571299-10571343)
[»] scaffold0128 (3 HSPs)
scaffold0128 (353-661)||(34021-34329)
scaffold0128 (580-661)||(29236-29317)
scaffold0128 (116-242)||(33781-33907)
[»] chr3 (2 HSPs)
chr3 (354-663)||(3837671-3837980)
chr3 (13-191)||(3838134-3838313)
[»] scaffold0267 (2 HSPs)
scaffold0267 (350-663)||(13152-13465)
scaffold0267 (13-191)||(13615-13794)
[»] chr7 (3 HSPs)
chr7 (354-596)||(20475969-20476211)
chr7 (34-176)||(20475663-20475806)
chr7 (379-431)||(15571919-15571971)
[»] chr8 (8 HSPs)
chr8 (360-478)||(40794177-40794295)
chr8 (493-663)||(29124628-29124798)
chr8 (357-478)||(29124849-29124973)
chr8 (113-241)||(29125102-29125230)
chr8 (442-663)||(31669502-31669720)
chr8 (374-425)||(29126468-29126519)
chr8 (13-182)||(29126661-29126830)
chr8 (560-645)||(40794307-40794392)


Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Original strand, 33637309 - 33637956
Alignment:
Q  13 aaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgt 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33637309 aaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgt 33637408  T
Q  113 tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag 212  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637409 tgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag 33637508  T
Q  213 ctttatcatctctcctattatacataataatatcatcaaaagctcctttgctagccatcaacatgacatttccattttcagagagacaaaccggaaacaa 312  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33637509 ctctatcatctctcctattatacatactaatatcatcaaaagctcctttgctagccagcaacatgacatttccattttcagagagacaaaccggaaacaa 33637608  T
Q  313 ccaatcaactaaattgagattcatagaaatacccaattgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcc 412  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33637609 ccaatcaactaaattgagattcacacaaatacccaattgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttct 33637708  T
Q  413 cacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccat 512  Q
    |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   | ||||||||||||    
T  33637709 cacaaaacaagatgggttctcatgtggacataataaaggcacagacgatccctcaaaacaacaagagttggttcatctttggg---tacaacaaaaccat 33637805  T
Q  513 caggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637806 caggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatt 33637905  T
Q  613 tatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaac 663  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  33637906 tatgttgtgacgtgctaaccaattaacactaccattcacgaattgtccaac 33637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 353 - 661
Target Start/End: Original strand, 13784358 - 13784666
Alignment:
Q  353 acatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggc 452  Q
    ||||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||    
T  13784358 acataactgacattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatttgatcataataaaggc 13784457  T
Q  453 acaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatc 552  Q
    | |  ||| ||||||||||| |||||| ||||||||||| |||||| ||| ||||||||||||| | ||  |||||||||||   |||| |||||| |||    
T  13784458 agaggcgacccctcaaaacagcaagagctggttcatcttggggcacctcaccaaaaccatcaggcagcaaaatatacttacatttctccttccgcagatc 13784557  T
Q  553 aaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacg 652  Q
    ||  || |||| ||||||||| | ||| |||| ||||| |||||||||   || ||  |||| ||||||| |||||||||| ||||||||||||||||||    
T  13784558 aagtgaaaaaaccactaattgttggatagtaatattttcccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactaccattcacg 13784657  T
Q  653 gatggtcca 661  Q
     ||||||||    
T  13784658 aatggtcca 13784666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
Q  121 agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca 220  Q
    ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| ||   |||||||| ||||| | ||| || || |  |||| || |||||    
T  13784126 agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca 13784225  T
Q  221 tctctcctattatacataataa 242  Q
    ||||||| ||||||||||||||    
T  13784226 tctctccgattatacataataa 13784247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 10553569 - 10553613
Alignment:
Q  378 tccaagactcttgaactccaaactctctcatttcccacaaaacaa 422  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||    
T  10553569 tccaagactcttgaactccaaaatctgtcattttccataaaacaa 10553613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 10571299 - 10571343
Alignment:
Q  378 tccaagactcttgaactccaaactctctcatttcccacaaaacaa 422  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||    
T  10571299 tccaagactcttgaactccaaaatctgtcattttccataaaacaa 10571343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 353 - 661
Target Start/End: Original strand, 34021 - 34329
Alignment:
Q  353 acatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggc 452  Q
    ||||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||    
T  34021 acataactgacattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatatgatcataataaaggc 34120  T
Q  453 acaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatc 552  Q
    | |  ||| ||||||||||| |||||| ||||||||||| |||||  ||| ||||||||   || ||||  ||||||||||| | |||| |||||| |||    
T  34121 agaggcgacccctcaaaacagcaagagctggttcatcttcgggcagctcaccaaaaccaatgggcaacaaaatatacttacatgtctccttccgcagatc 34220  T
Q  553 aaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacg 652  Q
    ||  || |||| ||||||||| | |||||||||||||| |||||||||   || ||  |||| ||||||| |||||||||| |||||||| |||||||||    
T  34221 aagtgaaaaaaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactgccattcacg 34320  T
Q  653 gatggtcca 661  Q
     ||||||||    
T  34321 aatggtcca 34329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 661
Target Start/End: Original strand, 29236 - 29317
Alignment:
Q  580 ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtcca 661  Q
    ||||||||||| |||||||||  ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| ||||||||    
T  29236 ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtcca 29317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 33781 - 33907
Alignment:
Q  116 atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt 215  Q
    |||| ||||||||||||| ||||| | ||||||||||||||   |||||||||||| ||   |||||||||||||| | |||||  || |  || | ||     
T  33781 ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta 33880  T
Q  216 tatcatctctcctattatacataataa 242  Q
    |||||||||||| ||||||||||||||    
T  33881 tatcatctctccgattatacataataa 33907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 354 - 663
Target Start/End: Complemental strand, 3837980 - 3837671
Alignment:
Q  354 catagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggca 453  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||  ||    
T  3837980 catagctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaaaaca 3837881  T
Q  454 caaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatca 553  Q
    ||| | | | ||||||||| ||||  ||  |  ||||| || |||| |      | |||| || ||||  ||||||||||| |||||| | |||| ||||    
T  3837880 caagcaacctctcaaaacagcaagttttaatagatcttgggacactacggttgtagcatctggcaacaaaatatacttacatgcctcctttcgcaaatca 3837781  T
Q  554 aacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacgg 653  Q
    | ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| |||   | |||||| ||||||||||||||||||     
T  3837780 agcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgatacgttaaccagttaacactaccattcacga 3837681  T
Q  654 atggtccaac 663  Q
    ||||||||||    
T  3837680 atggtccaac 3837671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 3838313 - 3838134
Alignment:
Q  13 aaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttg 111  Q
    |||||| | ||||||||||  ||||||| |||||| ||||||| |||||  ||||  | |  ||||  |||||||||||||||| ||| |||||||||||    
T  3838313 aaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttg 3838214  T
Q  112 ttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt 191  Q
    |||||||  || |||||||||| |||||   |||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  3838213 ttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt 3838134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 350 - 663
Target Start/End: Complemental strand, 13465 - 13152
Alignment:
Q  350 tgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaa 449  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  13465 tgaacatagctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaa 13366  T
Q  450 ggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcat 549  Q
      ||||| | | ||||||||||| ||||  || ||  ||||| || |||| |      || ||| || ||||  ||||||||||| | |||| | ||||     
T  13365 aacacaagcaacccctcaaaacagcaagttttagtagatcttgggacactacggttgtactatctggcaacaaaatatacttacatgtctcctttcgcaa 13266  T
Q  550 atcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattc 649  Q
    ||||| ||| ||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| |||   | |||||| |||||||||||||||    
T  13265 atcaagcgaaaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgatacgttaaccagttaacactaccattc 13166  T
Q  650 acggatggtccaac 663  Q
    |   ||||||||||    
T  13165 agaaatggtccaac 13152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 13794 - 13615
Alignment:
Q  13 aaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttg 111  Q
    |||||| | ||||||||||  ||||||| |||||| ||||||| |||||  ||||  | |  ||||| |||||||||||||||| ||| ||||||| |||    
T  13794 aaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaacatttg 13695  T
Q  112 ttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt 191  Q
    |||||||  || |||||||||| |||||   |||||||||||||||| |||||||||||||||||| | |||||||||||    
T  13694 ttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 596
Target Start/End: Original strand, 20475969 - 20476211
Alignment:
Q  354 catagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggca 453  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |   ||||||||| |||    
T  20475969 catagctaacattcaccaaccgagtccaagactcttgaaccccaaactctctcatttcccacaaaacaaaatgggttctcatataatcataataaaagca 20476068  T
Q  454 caaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatca 553  Q
     |  |   |||||||||||  |||  |||||||||||| ||| | ||||  |||||||||||| |||| | ||||||| || | |||| |  | | ||||    
T  20476069 taggcagcccctcaaaacagtaagccttggttcatcttcgggaagttcactaaaaccatcaggcaacaacgtatacttgcatgtctccttttgtagatca 20476168  T
Q  554 aacgataaaatcactaattggttgatggtaacatttttccatt 596  Q
    |  || |||||  |||| || |||||||||||||||| |||||    
T  20476169 agtgaaaaaatagctaactgattgatggtaacattttcccatt 20476211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
Q  34 gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg 132  Q
    ||||||||||||||| |||||| ||| || | ||  | |||| ||  | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| |||    
T  20475663 gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg 20475762  T
Q  133 aagaggatggggcaaaaccaagctcttcatatgttcatcagcat 176  Q
    |  |||| | |||||||||||||||| |||||| |||| |||||    
T  20475763 acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat 20475806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 15571919 - 15571971
Alignment:
Q  379 ccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttc 431  Q
    ||||||||||| |||||||||||| ||||||| |||||  ||||||| |||||    
T  15571919 ccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttc 15571971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 40794177 - 40794295
Alignment:
Q  360 taacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacg 459  Q
    |||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||||| |  ||    
T  40794177 taacatccatcaaccgagtccaagattcttgaactccaaactctctcatttcccacaaaacaaaatgtgttctcatgtaatcataataaaggcaaaggcg 40794276  T
Q  460 atccctcaaaacaacaaga 478  Q
    | ||||||||||| |||||    
T  40794277 acccctcaaaacagcaaga 40794295  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 493 - 663
Target Start/End: Complemental strand, 29124798 - 29124628
Alignment:
Q  493 gggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttc 592  Q
    ||||| ||||| |||||||| ||  |||| |||||||||||| ||||||| |||||||||||  |||||||| | ||| || | ||   |||||||||||    
T  29124798 gggcatttcaataaaaccattagacaacaacatatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttc 29124699  T
Q  593 catttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaac 663  Q
     ||| || |||||||||||||| | | |||||||||||| | |||| ||||||||||||| ||||||||||    
T  29124698 aattcattcatatgacaatttaagctatgacgtgctaactagttaatactaccattcacgaatggtccaac 29124628  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 29124973 - 29124849
Alignment:
Q  357 agctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggac---ataataaaggca 453  Q
    |||||| |||||||||  | ||||||||||||||||||||||||||||||||| ||||||||   |||| ||||||||| ||| |   ||||||||||||    
T  29124973 agctaatattcaccaagtgggtccaagactcttgaactccaaactctctcattccccacaaagtgaaatgggttctcatctggtcataataataaaggca 29124874  T
Q  454 caaacgatccctcaaaacaacaaga 478  Q
    ||| ||| ||||||||||| |||||    
T  29124873 caatcgacccctcaaaacagcaaga 29124849  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
Q  113 tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag 212  Q
    ||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| |||||||  |||||||| ||  ||||||  ||||||   |     
T  29125230 tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa 29125131  T
Q  213 ctttatcatctctcctattatacataata 241  Q
    || |||||||||||||| |||||||||||    
T  29125130 ctctatcatctctcctactatacataata 29125102  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 663
Target Start/End: Complemental strand, 31669720 - 31669502
Alignment:
Q  442 ataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctcc 541  Q
    ||||||||||||||  |||  ||| |||||| ||||| ||||  ||| || ||||| |||||||||||||| |||   || |||||||||| | | || |    
T  31669720 ataataaaggcacatgcgactccttaaaacatcaagatttggcccattttggggcatttcaacaaaaccattagg---cagcatatacttatatgtcttc 31669624  T
Q  542 atccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacac 641  Q
    |||  |||||||| ||||||||| ||||| |||| || | |||||||||   ||| || ||||||  |||||| | | ||| |||||||| | |||| ||    
T  31669623 atcttcatatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatac 31669524  T
Q  642 taccattcacggatggtccaac 663  Q
    ||||||||||| ||||||||||    
T  31669523 taccattcacgaatggtccaac 31669502  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 29126519 - 29126468
Alignment:
Q  374 cgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaat 425  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  29126519 cgagtccaagactcttaaactccaaactctctcatttcacccaaaataaaat 29126468  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 29126830 - 29126661
Alignment:
Q  13 aaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacagttg 111  Q
    |||||||| ||||||| ||  ||||||||||||||||||   | |||||| ||||||| |||||||| || |||  || ||| |||| | ||||  ||||    
T  29126830 aaaataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattgttg 29126731  T
Q  112 ttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa 182  Q
    ||||||||||| |||||| ||||   |||| ||||||| |||||| | |||||||||| |  |||||||||    
T  29126730 ttgcatagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa 29126661  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 645
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
Q  560 aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc 645  Q
    |||| ||||||||| | |||||||||||||| |||||||||   || ||  |||| ||||||| |||||||| | |||||||||||    
T  40794307 aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc 40794392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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