View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_high_18 (Length: 250)
Name: NF20942_high_18
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 242
Target Start/End: Complemental strand, 51705675 - 51705473
Alignment:
| Q |
44 |
ttaaatataatcagaccatatataaat--gtaaattgctgaggttggcatgaccatttcaatttttt--gtccaattttcaaacagataatcttaaattt |
139 |
Q |
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| T |
51705675 |
ttaaatataatcagaccatatataaatatgtaaattgctgaggttggcatgaccatttcaattttttttgtccagttttcaaacagataatcttaaattt |
51705576 |
T |
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| Q |
140 |
aaatataaaagtgcgcgtttttctttgccaaccgattttgaagagaaaattcagccacaacaataaatttcgtactcttcatttaccaaactaccccttt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51705575 |
aaatataaaagtgcgcgtttttctttgccaaccgattttgaagagaaaattcagccacaacaataaatttcgtactgttcatttaccaaactaccccttt |
51705476 |
T |
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| Q |
240 |
gct |
242 |
Q |
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||| |
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| T |
51705475 |
gct |
51705473 |
T |
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