View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_high_24 (Length: 233)
Name: NF20942_high_24
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_high_24 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0648 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 6492 - 6689
Alignment:
| Q |
36 |
gaaatataaaaagacttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctac |
135 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6492 |
gaaatataaaaagatttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctac |
6591 |
T |
|
| Q |
136 |
agccgagcacacgatattctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
233 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6592 |
agccgagcacacgatattctagggtcgtgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
6689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 16965 - 16768
Alignment:
| Q |
36 |
gaaatataaaaagacttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctac |
135 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16965 |
gaaatataaaaagatttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctac |
16866 |
T |
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| Q |
136 |
agccgagcacacgatattctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
233 |
Q |
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| T |
16865 |
agccgagcacacgatattctagggtcgtgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
16768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 41427005 - 41427201
Alignment:
| Q |
37 |
aaatataaaaagacttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctaca |
136 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41427005 |
aaatataaaaagatttttcctttcttggggttcaagcaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctaca |
41427104 |
T |
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| Q |
137 |
gccgagcacacgatattctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41427105 |
gccgagcacacgatattctagggtcatgtaaagcatacacagaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
41427201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 41433413 - 41433587
Alignment:
| Q |
51 |
ttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgat |
150 |
Q |
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|||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41433413 |
ttttcctttcttggggttcaagcaactgattaaagccatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacatgat |
41433512 |
T |
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| Q |
151 |
attctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgtt |
225 |
Q |
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||||| | ||| |||||| |||||| |||||||||||||||||||||||| | || ||||||||| || ||||| |
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| T |
41433513 |
attctggcgtcgtgtaaaacatacatggaaggtgttcaagttggttgtttggcgaagggcggggttcaagatgtt |
41433587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 41449762 - 41449907
Alignment:
| Q |
51 |
ttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgat |
150 |
Q |
| |
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|||||||||||||||||||||| |||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
41449762 |
ttttcctttcttggggttcaagcaactcgtttaagtcttttatggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcatataat |
41449861 |
T |
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| Q |
151 |
attctagggtcatgtaaagcatacacggaaggtgttcaagttggtt |
196 |
Q |
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||| | ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
41449862 |
attttggggtcatgtaaagcatacatggaaggtgctcaagttggtt |
41449907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 41443102 - 41443263
Alignment:
| Q |
50 |
cttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacga |
149 |
Q |
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||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
41443102 |
ctttttctttcttgaggctcaagcaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagcagagcacatga |
41443201 |
T |
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| Q |
150 |
tattctagggtcatgtaaagcataca---cggaaggtgttcaagttggttgttttgtcaaag |
208 |
Q |
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||| || || ||||||||||||||| ||| ||||||| |||||| |||||| |||||| |
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| T |
41443202 |
tatcctgggaacatgtaaagcatacatggaggagggtgttcgagttggctgttttttcaaag |
41443263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 33364481 - 33364637
Alignment:
| Q |
51 |
ttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgat |
150 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
33364481 |
ttttcctttcttggggttcaagcaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagcagagcacatgat |
33364580 |
T |
|
| Q |
151 |
attctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaa |
207 |
Q |
| |
|
|| || ||||||||||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
33364581 |
atcctgaggtcatgtaaagcctacatggaaggtgttcaagttggttgtttggtcaaa |
33364637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 33370840 - 33371011
Alignment:
| Q |
51 |
ttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgat |
150 |
Q |
| |
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||||||||||||||||||||| |||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
33370840 |
ttttcctttcttggggttcaac-aactgatttacgtcatttttg--tttcagaatttcgaagaccttgttgtggggcatttctacagcagagcacatgat |
33370936 |
T |
|
| Q |
151 |
attctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgtt |
225 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| || ||||| |
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| T |
33370937 |
atcctgaggtcatgtaaagcatacacggaaggtgttcaagttggttgtttggccaaaggcggagttcaagatgtt |
33371011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 5838382 - 5838275
Alignment:
| Q |
88 |
atttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgatattctagggtcatgtaaagcatacacggaaggtgttc |
187 |
Q |
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||||||||||| ||||||||||| || || | |||||||||||| | |||||| || |||||||||||| |||| || ||||||| |||||||| || |
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| T |
5838382 |
atttttggttt-cagaattttgaggattttatagtggggcatttcctcgtccgagctcatgatattctaggggcatgcaaggcatacatggaaggtgctc |
5838284 |
T |
|
| Q |
188 |
aagttggtt |
196 |
Q |
| |
|
|||| |||| |
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|
| T |
5838283 |
aagtgggtt |
5838275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 7762407 - 7762225
Alignment:
| Q |
51 |
ttttcctttcttggggttcaagtaactgatttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgat |
150 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || || |||||||||||||||||| ||||||||||| |||| |||||||||| | ||||||| || |
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| T |
7762407 |
ttttcctttcttggggttcaagcaactgatttaagtcatatttggttttcagaattttaaagaccttgttatgggccatttctacaacagagcacatcat |
7762308 |
T |
|
| Q |
151 |
attctagggtcatgtaaagcatacacggaaggtgttcaagttggttgttttgtcaaaggcggggttgaaaatgttaataaggg |
233 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||||||||||||||||||| | ||||||| ||||| |||||||||| ||||| |
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|
| T |
7762307 |
attctaggtttatgtaaagcatacatggaaggtgttcaagttggttgtttcgacaaaggcagggttcaaaatgttaacaaggg |
7762225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 21221419 - 21221282
Alignment:
| Q |
79 |
atttaggtaatttttggttttcagaattttgaagaccttgttgtggggcatttctacagccgagcacacgatattctagggtcatgtaaagcatacacgg |
178 |
Q |
| |
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|||||||| ||||| |||||||||| |||||| ||| ||||| |||||| |||| |||||||| || |||||| | | | ||||||||||||| || |
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|
| T |
21221419 |
atttaggttattttgggttttcagagttttgaggactttgttaaggggcacttctgcagccgaggtcaggatattttggtagcttgtaaagcatacatgg |
21221320 |
T |
|
| Q |
179 |
aaggtgttcaagttggttgttttgtcaaaggcggggtt |
216 |
Q |
| |
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| |||| ||| ||||||||||| |||||||| |||||| |
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| T |
21221319 |
atggtgctcaggttggttgtttggtcaaaggtggggtt |
21221282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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