View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20942_high_3 (Length: 453)

Name: NF20942_high_3
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20942_high_3
NF20942_high_3
[»] chr7 (4 HSPs)
chr7 (1-126)||(33721206-33721331)
chr7 (91-131)||(3387290-3387330)
chr7 (71-134)||(18147670-18147732)
chr7 (92-134)||(11508795-11508837)
[»] chr3 (3 HSPs)
chr3 (3-134)||(15777339-15777465)
chr3 (92-134)||(9733706-9733748)
chr3 (91-134)||(49969034-49969077)
[»] chr5 (3 HSPs)
chr5 (37-134)||(39176407-39176505)
chr5 (91-134)||(24068063-24068106)
chr5 (2-87)||(39435954-39436038)
[»] scaffold0009 (1 HSPs)
scaffold0009 (91-134)||(160392-160435)
[»] chr6 (2 HSPs)
chr6 (71-134)||(19769096-19769158)
chr6 (91-132)||(19400930-19400971)
[»] chr4 (4 HSPs)
chr4 (3-134)||(23974088-23974218)
chr4 (59-134)||(11153779-11153854)
chr4 (91-135)||(15239992-15240036)
chr4 (103-134)||(46224426-46224457)
[»] scaffold0461 (1 HSPs)
scaffold0461 (102-134)||(12317-12349)
[»] chr1 (3 HSPs)
chr1 (102-134)||(91083-91115)
chr1 (3-76)||(18513817-18513889)
chr1 (93-134)||(41136794-41136835)
[»] chr8 (2 HSPs)
chr8 (91-134)||(9883280-9883323)
chr8 (3-78)||(40391396-40391470)
[»] scaffold0120 (1 HSPs)
scaffold0120 (92-134)||(29145-29187)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 33721331 - 33721206
Alignment:
Q  1 acatagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagtgtctattcatttataagggttg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  33721331 acatagcgagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaactagagataagggggagtgtttattcatttataagggttg 33721232  T
Q  101 cgtactcatgtgggtagtgaagggtt 126  Q
    |||| | |||||||||||||||||||    
T  33721231 cgtatttatgtgggtagtgaagggtt 33721206  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 3387330 - 3387290
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaa 131  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  3387330 ataagggttgtgtactcatgtgggtagtgaagggttgttaa 3387290  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 18147670 - 18147732
Alignment:
Q  71 gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||||||   ||||||||||    
T  18147670 gggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaaaattgttaattt 18147732  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 11508795 - 11508837
Alignment:
Q  92 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||    
T  11508795 taagggttgtgtaatcatgtggatagtgaagggttgttaattt 11508837  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 15777339 - 15777465
Alignment:
Q  3 atagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagtgtctattcatttataagggttgcg 102  Q
    |||| |||||||||||||||||||||||| || |||| ||||||||  ||  || ||||||||| ||||||||||| | |||||| | |||||||||| |    
T  15777339 atagcgagaagaacctagagagagatttc-accgtaggaatttatcacttttgc-aaactagaggtaagggggagt-tttattca-tcataagggttgtg 15777434  T
Q  103 tactcatgtgggtagtgaagggttgttaattt 134  Q
    |||| |||||||||||||| ||||||||||||    
T  15777435 tacttatgtgggtagtgaa-ggttgttaattt 15777465  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 9733706 - 9733748
Alignment:
Q  92 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  9733706 taagggttgtgtactcatgtggatagtgaagggttgttaattt 9733748  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 49969034 - 49969077
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  49969034 ataagggttgtgtactcgtgtgggtagtgaaaggttgttaattt 49969077  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 39176505 - 39176407
Alignment:
Q  37 tagaaatttatctattccgcaaaactagagataaggggg--agtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||| | ||| ||| ||||||||||||| ||| ||||  ||| |||||||||  |||||||||| |||||||||||||||||||| | ||||||||||    
T  39176505 tagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaagattgttaattt 39176407  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 24068106 - 24068063
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||||| |||| | ||||||||||||||||||||||||||    
T  24068106 ataagggttgtgtacgcgtgtgggtagtgaagggttgttaattt 24068063  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 39435954 - 39436038
Alignment:
Q  2 catagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagtgtctattca 87  Q
    |||||| ||||||| ||| |||||||||||| || ||| || | ||| ||| | ||||||||||| ||||||||||| ||||||||    
T  39435954 catagtaagaagaatctaaagagagatttcaccg-taggaaatcatcaatttcacaaaactagaggtaagggggagtctctattca 39436038  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 160435 - 160392
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  160435 ataagggttgtttactcatgtgggtagtgaagggttgttaattt 160392  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 19769096 - 19769158
Alignment:
Q  71 gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||||| | ||||||||||    
T  19769096 gggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaagattgttaattt 19769158  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 19400971 - 19400930
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaat 132  Q
    |||||||||| |||||| ||||||||||||| ||||||||||    
T  19400971 ataagggttgtgtactcgtgtgggtagtgaaaggttgttaat 19400930  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 23974218 - 23974088
Alignment:
Q  3 atagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataa--gggggagtgtctattcatttataagggttg 100  Q
    |||| |||||||||||||||| |||||||| || ||| || | ||| |||| ||||| |||||| |||  |||||||| | |||||||  ||||||| ||    
T  23974218 atagcgagaagaacctagagaaagatttcaccg-taggaaatcatcaattctgcaaa-ctagaggtaatggggggagtttttattcatc-ataagggctg 23974122  T
Q  101 cgtactcatgtgggtagtgaagggttgttaattt 134  Q
     ||| |||||||| ||||||||||||||||||||    
T  23974121 tgtattcatgtggatagtgaagggttgttaattt 23974088  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 11153854 - 11153779
Alignment:
Q  59 aactagagataa-gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||| ||| |||||||| |||||||||  |||||||||| ||||||||||||||||||||   ||||||||||    
T  11153854 aactagaggtaatgggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaaaattgttaattt 11153779  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 15239992 - 15240036
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaatttc 135  Q
    |||||||||| || |||||||| ||||||||||||||||||||||    
T  15239992 ataagggttgtgtgctcatgtgtgtagtgaagggttgttaatttc 15240036  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 46224426 - 46224457
Alignment:
Q  103 tactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||||||||||||||||||||||||||    
T  46224426 tactcatgtgggtagtgaagggttgttaattt 46224457  T

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Target: scaffold0461 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 12349 - 12317
Alignment:
Q  102 gtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||||||||||||||||||||||||||||    
T  12349 gtactcatgtgggtagtgaagggttgttaattt 12317  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 91115 - 91083
Alignment:
Q  102 gtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||||||||||||||||||||||||||||||    
T  91115 gtactcatgtgggtagtgaagggttgttaattt 91083  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 18513817 - 18513889
Alignment:
Q  3 atagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataaggggga 76  Q
    |||||||||||||||||||||||||||| |||  ||| || | ||| ||| |||||||||| || |||||||||    
T  18513817 atagtgagaagaacctagagagagattttaac-ataggaaatcatcaatttcgcaaaactaaaggtaaggggga 18513889  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 41136794 - 41136835
Alignment:
Q  93 aagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||  ||||||||||||||||||| ||||||||||||    
T  41136794 aagggttgtatactcatgtgggtagtgaatggttgttaattt 41136835  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 9883323 - 9883280
Alignment:
Q  91 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||    
T  9883323 ataaggattgtgtactcatgtgggtagttaagggttgttaattt 9883280  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 40391470 - 40391396
Alignment:
Q  3 atagtgagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagt 78  Q
    |||| |||||||||||| ||||||||||||||  ||||||   ||| ||| ||||||||||||| |||||||||||    
T  40391470 atagcgagaagaacctaaagagagatttcaac-ttagaaaaccatcaatttcgcaaaactagaggtaagggggagt 40391396  T

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Target: scaffold0120 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 29187 - 29145
Alignment:
Q  92 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 134  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  29187 taagggttgtgtaatcatgtgggtagtgaagggtttttaattt 29145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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