View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20942_high_6 (Length: 362)

Name: NF20942_high_6
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20942_high_6
NF20942_high_6
[»] chr5 (1 HSPs)
chr5 (17-346)||(35558124-35558453)
[»] chr3 (2 HSPs)
chr3 (78-333)||(31754979-31755234)
chr3 (175-261)||(25740146-25740232)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 35558124 - 35558453
Alignment:
Q  17 tcatcactggtggttcaaccctttgatccaaaattttcatcgattctcctttcataattataggcactgcaaaatctactatactaattggtgttcctcc 116  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35558124 tcatctctggtggttcaaccctttgatccaaaattttcatcaattctcctttcataattataggcactgcaaaatctactatactaattggtgttcctcc 35558223  T
Q  117 attttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcctagaccataaacatcactctttgctgttaatacatttaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35558224 attttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcctagaccataaacatcactctttgctgttaatacatttaga 35558323  T
Q  217 ccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtctataatcatgatcagaatccggactcaacattgacaatccgaaatcag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35558324 ccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtcgataatcatgatcagaatccggactcaacattgacaatccgaaatcag 35558423  T
Q  317 acactctagccgtccaatccgcgtcaatga 346  Q
    |||||||||| |||||||||||||||||||    
T  35558424 acactctagctgtccaatccgcgtcaatga 35558453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 31754979 - 31755234
Alignment:
Q  78 aggcactgcaaaatctactatactaattggtgttcctccattttcatcattcttgaatatagctctttttcctgttaatagctcaagtaaaactactcct 177  Q
    ||||||||||||||| |||||||| |  ||  ||||||||| |||| |||||   ||||||||||||||||||||||| |  || ||||| || |||||     
T  31754979 aggcactgcaaaatcaactatactcaaaggatttcctccatcttcaccattccgaaatatagctctttttcctgttaacaattccagtaatacaactcca 31755078  T
Q  178 agaccataaacatcactctttgctgttaatacatttagaccataatattcaggatcgatgtatccaaccgttccggctgcttttgttggtctataatcat 277  Q
    || |||||||||||||||||||||||||||| ||| | |||||| || || |||||||| || ||||| ||||| |||| |||||||||| | ||||||     
T  31755079 agtccataaacatcactctttgctgttaataaattcaaaccatagtactcgggatcgatataaccaactgttcctgctgtttttgttggtttgtaatcaa 31755178  T
Q  278 gatcagaatccggactcaacattgacaatccgaaatcagacactctagccgtccaa 333  Q
     |||||| || ||||||| || ||| ||||| |||||||| ||||| || ||||||    
T  31755179 tatcagattctggactcatcaatgataatccaaaatcagatactcttgctgtccaa 31755234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 25740146 - 25740232
Alignment:
Q  175 cctagaccataaacatcactctttgctgttaatacatttagaccataatattcaggatcgatgtatccaaccgttccggctgctttt 261  Q
    |||| ||||||||||||||| |||| |||||| ||||||| | |||| || |||||||| ||||| ||||| |||||| | ||||||    
T  25740146 cctaaaccataaacatcactttttgttgttaaaacatttaaaacatagtactcaggatctatgtaaccaacggttccgaccgctttt 25740232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University