View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_low_1 (Length: 621)
Name: NF20942_low_1
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 16 - 605
Target Start/End: Original strand, 49812385 - 49812964
Alignment:
| Q |
16 |
atcccttgctggtggaaaaaacatgaaaaagcatgcaacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatgaaaccccat |
115 |
Q |
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| T |
49812385 |
atcccttgctggtggaaaaaacatgaaaaagcatgcaacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatgaaaccccat |
49812484 |
T |
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| Q |
116 |
cggagctcaggtgactctatcatcgacggatacaggctgtcgccatgtgcgtgggaaaacccagcctcaatgtcacccttacccatgccggtgataaaca |
215 |
Q |
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| T |
49812485 |
cggagctcaggtgactctatcatcgacggatacaggttgtcgccatgtgcgtgggaaaatccagcctcaatgtcacccttacccatgccggtgataaaca |
49812584 |
T |
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| Q |
216 |
caaacaaacaacctccaaaacaaagaatatgtatgatcaatgaagaattgaattggatatgcttttatatttcaatggcttaatttggttgtttattcgg |
315 |
Q |
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| T |
49812585 |
caaacaaacaacctccaaaacaaagaatatgtatgatcaatgaagaattgaattggatatgcttttatatttcaatggct----------gtttattcgg |
49812674 |
T |
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| Q |
316 |
ttgaaatagcgaatcttgtcttttttattttaaaccgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggcatatgcgtg |
415 |
Q |
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| T |
49812675 |
ttgaaataacgaatcttgtcttttttattttaaaccgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggcatatgcgtg |
49812774 |
T |
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| Q |
416 |
tgtgtgatttttgttgttcatttcgctgtcttcaaacgagcaccattaatattatgtctcaaatcataacgtcatatgacacctaccacttatttacctt |
515 |
Q |
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| T |
49812775 |
tgtgtgatttttgttgttcattttgctgtcttcaaacgagcaccgttaatattatgtctcaaatcataacgtcatatgacacctaccacttatttacctt |
49812874 |
T |
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| Q |
516 |
atatatacagtacaaaataataataataaagtacaaaacaacctccaagatttacaatactcatcatgttacgtacgcatcacctatttg |
605 |
Q |
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| T |
49812875 |
atatatacagtacaaaataataataataaagtacaaaacaacctccaagatttacaatactcatcatgttacgtacgcatcacctatttg |
49812964 |
T |
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